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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatatagctactctttgaggttctgctcatgtctaataggtcgtagtctaaaccatacagtttgcagGTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAA

Basic information

species Zea mays
transcript GRMZM2G069676_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069676_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os07g26610.1 (Oryza sativa), 3'ss of exon 10
gtacata-tagctactctttgaggttctgctcatgtctaataggtcgtagtctaaaccatacagtttgcagGTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAA
||| | | ||  ||  | ||||  || | |   |   ||||         |  |||   | | |||||||||||||| ||||||||||| || ||||||||||| || |||||| ||||||||||||||||| |||||||||||||||| || 
gtataaaatatatagccattgaaattatacaggttcgtaatgcacaacccta-aaattgtgccgtttgcagGTCTGCTGCTGTTGATTCAAGTGGTCGTGAGTTAAACCGTAACAGATTGATTGCTTTGATGTCTGCCATAGTTCTTGAAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211441851|gb|FL182588.1|FL182588
EST:     CTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAG                         GTCTGCGGCTGTTGATTCCA-GGGTCGTGAGTTGAATCGTAACCGATTGAT
genomic: CTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAGgtacatatag ... cagtttgcagGTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGAT
EST: gi|32933693|gb|CF038505.1|CF038505
EST:     CTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAG                         GTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGAT
genomic: CTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAGgtacatatag ... cagtttgcagGTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGAT
EST: gi|60341753|gb|DN208726.1|DN208726
EST:     CTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAG                         GTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGAT
genomic: CTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAGgtacatatag ... cagtttgcagGTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGAT
EST: gi|32832812|gb|CD972490.1|CD972490
EST:     CTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAG                         GTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGAT
genomic: CTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAGgtacatatag ... cagtttgcagGTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGAT
EST: gi|33094155|gb|CF054149.1|CF054149
EST:     CTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAG                         GTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGAT
genomic: CTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAGgtacatatag ... cagtttgcagGTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgaggttctgctcatgtctaataggtcgtagtctaaaccatacagtttgcagGTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGATTGCTTTGATGGCTGCCATAGTTCTTGAGGAA
                                 gtctaaa  putative branch site (score: 3)
                   tctaata  TA-rich tract