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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacctctaattctccttatactggcggacagacctaacgtgctatttttattttcagatgattaaacatctatttacctccaataattcactctcttgcagGAGGCCTGCAGATTCTATACGATTGAAAGTGCATTTGCCCTTACAGTTGCTTTTCTCATCAACATATCTATCATATCTGTCAGTGGTTCTGTCTGTGGTT

Basic information

species Zea mays
transcript GRMZM2G069198_T04
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069198_T04 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os06g46310.2 (Oryza sativa), 3'ss of exon 9
gtaacctctaattctccttatactggcggacagacctaacgtgctatttttattttcagatgattaaaca-tctatttacctccaataattcactctcttgcagGAGGCCTGCAGATTCTATACGATTGAAAGTGCATTTGCCCTTACAGTTGCTTTTCTCATCAACATATCTATCATATCTGTCAGTGGTTCTGTCTGTGGTT
|  |  | | ||       ||| ||||   ||||  | || |   | |   ||  ||   |||||||| | |  |||||  || |  |||||||  ||||||||||||| || |||||||||| ||||||||||||||||||||| ||  | || || ||||| |||||||||||||||||||| |||||| ||||||| || |
gctaaatattatctaagaaatattggcatgcaga--tgacataaaaataacatcgtcg--tgattaaataattaatttatttcgaccaattcaccttcttgcagGAGGCATGTAGATTCTATATGATTGAAAGTGCATTTGCCCTCACGATAGCGTTCCTCATTAACATATCTATCATATCTGTTAGTGGTGCTGTCTGCGGGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88757771|gb|DY541912.1|DY541912
EST:     CAGCATTAGTATTGTCAAGAAAAGTGCCACGGTCTGTTCATGGGATTAAG                         GAGGCCTGCAGATTCTATACGATTGAAAGTGCATTTGCCCTTACAGTTGCT
genomic: CAGCATTAGTATTGTCAAGAAAAGTGCCACGGTCTGTTCATGGGATTAAGgtaacctcta ... tctcttgcagGAGGCCTGCAGATTCTATACGATTGAAAGTGCATTTGCCCTTACAGTTGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattttcagatgattaaacatctatttacctccaataattcactctcttgcagGAGGCCTGCAGATTCTATACGATTGAAAGTGCATTTGCCCTTACAGTTGCTTTTCTCATCAACATATCTATCATATCTGTCAGTGGTTCTGTCTGTGGTT
                                        ttcactctctt  CT-rich tract
              attaaacatctattta  TA-rich tract