1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gataatttggcttagaagtcagcacccagcacttctatctaagctggagtgttgtggtaatcagtatttttgttcttatgatggttttttgatactgcagCTCATCACAGATGTTAATTTGGCTGTTTCGGTGGAAGCTACTCAGGCAATTGGGAATTTAGCTAGAGGTTTAAGAGCCCAATTTTCTGGAAATGCACGAA
species | Zea mays |
transcript | GRMZM2G068755_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: NNNNNNTTGCTCCTGGTGATTTTCATGAAATTTGCCGGACACTGAAGAAG CTCATCACAGATGTTAATTTGGCTGTTTCGGTGGAAGCTACTCAGGCAATTEST: gi|18963448|gb|BM660440.1|BM660440
genomic: AAAAAATTGCTCCTGGTGATTTTCATGAAATTTGCCGGACACTGAAGAAGgtcaagtctc ... gatactgcagCTCATCACAGATGTTAATTTGGCTGTTTCGGTGGAAGCTACTCAGGCAATT
EST: NNNNNNTTGCTCCTGGTGATTTTCATGAAATTTGCCGGACACTGAAGAAG CTCATCACAGATGTTAATTTGGCTGTTTCGGTGGAAGCTACTCAGGCAATTEST: gi|166462181|gb|EG124563.1|EG124563
genomic: AAAAAATTGCTCCTGGTGATTTTCATGAAATTTGCCGGACACTGAAGAAGgtcaagtctc ... gatactgcagCTCATCACAGATGTTAATTTGGCTGTTTCGGTGGAAGCTACTCAGGCAATT
EST: TGCCGGACACTGAAGAAG CTCATCACAGATGTTAATTTGGCTGTTTCGGTGGAAGCTACTCAGGCAATTEST: gi|166565013|gb|EG276553.1|EG276553
genomic: TGCCGGACACTGAAGAAGgtcaagtctc ... gatactgcagCTCATCACAGATGTTAATTTGGCTGTTTCGGTGGAAGCTACTCAGGCAATT
EST: CGGACACTGAAGAAG CTCATCACAGATGTTAATTTGGCTGTTTCGGTGGAAGCTACTCAGGCAATT
genomic: CGGACACTGAAGAAGgtcaagtctc ... gatactgcagCTCATCACAGATGTTAATTTGGCTGTTTCGGTGGAAGCTACTCAGGCAATT
ggagtgttgtggtaatcagtatttttgttcttatgatggttttttgatactgcagCTCATCACAGATGTTAATTTGGCTGTTTCGGTGGAAGCTACTCAGGCAATTGGGAATTTAGCTAGAGGTTTAAGAGCCCAATTTTCTGGAAATGCACGAA
ttttgat putative branch site (score: 225)
ttttttg CT-rich tract
tatttttgttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gataatttggcttagaagtcagcacccagcacttctatctaagctggagtgttgtggtaatcagtatttttgttcttatgatggttttttgatactgcagCTCATCACAGATGTTAATTTGGCTGTTTCGGTGGAAGCTACTCAGGCAATTGGGAATTTAGCTAGAGGTTTAAGAGCCCAATTTTCTGGAAATGCACGAA
- - - - - - - - - -cagcacc
- - - - - - - - - - - - - - gcacttc
- - - - - - - - - - - - - - - - - - - - - gctggag
- - - - - - - - - - - - - - - - - - - - - - - - -tgttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatggt