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gtacatgcgttctgtggatcagtgctttctctgtcttaataccattgggcatatttaagttgtttttcttgttttacagATTGATTTGTTGGCTGAAATTTCAATAGCACCACGAATCATGTCGGATGTTGATGGTGCCCTTAAATCAAAGCAGTTGAAGACTGAGGTTGATGAATATC
species | Zea mays |
transcript | GRMZM2G065130_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTTTCCACGTAACATGAGACTGCCAGACCCTTCTACCCCTAATCTAAAG ATTGATTTGTTGGCTGAAATTTCAATAGCACCACGAATCATGTCGGATGTTEST: gi|211183842|gb|FL001299.1|FL001299
genomic: CTTTTCCACGTAACATGAGACTGCCAGACCCTTCTACCCCTAATCTAAAGgtacatgcgt ... tgttttacagATTGATTTGTTGGCTGAAATTTCAATAGCACCACGAATCATGTCGGATGTT
EST: CTTTTCCACGTAACATGAGACTGCCAGACCCTTCTACCCCTAATCTAAAG ATTGATTTGTTGGCTGAAATTTCAATAGCACCACGAATCATGTCGGATGTTEST: gi|166702237|gb|EG275237.1|EG275237
genomic: CTTTTCCACGTAACATGAGACTGCCAGACCCTTCTACCCCTAATCTAAAGgtacatgcgt ... tgttttacagATTGATTTGTTGGCTGAAATTTCAATAGCACCACGAATCATGTCGGATGTT
EST: CTTTTCCACGTAACATGAGACTGCCAGACCCTTCTACCCCTAATCTAAAG ATTGATTTGTTGGCTGAAATTTCAATAGCACCACGAATCATGTCGGATGTTEST: gi|15499314|gb|BI595827.1|BI595827
genomic: CTTTTCCACGTAACATGAGACTGCCAGACCCTTCTACCCCTAATCTAAAGgtacatgcgt ... tgttttacagATTGATTTGTTGGCTGAAATTTCAATAGCACCACGAATCATGTCGGATGTT
EST: CTTTTCCACGTAACATGAGACTGCCAGACCCTTCTACCCCTAATCTAAAG ATTGATTTGTTGGCTGAAATTTCAATAGCACCACGAATCATGTCGGATGTTEST: gi|211183841|gb|FL001298.1|FL001298
genomic: CTTTTCCACGTAACATGAGACTGCCAGACCCTTCTACCCCTAATCTAAAGgtacatgcgt ... tgttttacagATTGATTTGTTGGCTGAAATTTCAATAGCACCACGAATCATGTCGGATGTT
EST: CTTTTCCACGTAACATGAGACTGCCAGACCCTTCTACCCCTAATCTAAAG ATTGATTTGTTGGCTGAAATTTCAATAGCACCACGAATCATGTCGGATGTT
genomic: CTTTTCCACGTAACATGAGACTGCCAGACCCTTCTACCCCTAATCTAAAGgtacatgcgt ... tgttttacagATTGATTTGTTGGCTGAAATTTCAATAGCACCACGAATCATGTCGGATGTT
ctttctctgtcttaataccattgggcatatttaagttgtttttcttgttttacagATTGATTTGTTGGCTGAAATTTCAATAGCACCACGAATCATGTCGGATGTTGATGGTGCCCTTAAATCAAAGCAGTTGAAGACTGAGGTTGATGAATATC
tcttaat putative branch site (score: 94)
ttgtttttcttgtttt putative PPT
atatttaagttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatgcgttctgtggatcagtgctttctctgtcttaataccattgggcatatttaagttgtttttcttgttttacagATTGATTTGTTGGCTGAAATTTCAATAGCACCACGAATCATGTCGGATGTTGATGGTGCCCTTAAATCAAAGCAGTTGAAGACTGAGGTTGATGAATATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA