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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcaggaattctcatctctactttgctgttatatctttctgaagtgctacttaatcattagtggttttttcagtgtgcacttttctgtctttcaatcagaactctctgtattcatatgaatcttcttttctgcccgaagaaaaaaaagtgatgatagtatccaaactctgtagATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGTCAAACAATGAATTGCCAAATGGCCAATTGGGAAGCTTGCAACCTCTCCC

Basic information

species Zea mays
transcript GRMZM2G062953_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062953_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g12880.1 (Oryza sativa), 3'ss of exon 9
gtatgtcaggaattctcatctctactttgctgttatatctttctgaagtgctacttaatcattagtggttttttcagtgtgcacttttctgtctttcaa--tcagaactctctgtattcatatgaatcttcttttctgcccgaagaaaaaaaagtgatgatagtatccaaactctgtagATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGTCAAACAATGAATTGCCAAATGGCCAATTGGGAAGCTTGCAACCTCTCCC-
                           |  ||  || | ||| |  | |   | ||    |       ||||| |        | |  || || ||  |  |||||||      | | |||     | |||| || ||  |   ||| |||   |||||    |  |  || | ||||||||| |||||||||  |||||| || ||||||||||| |||||| ||||| ||| |   ||  || ||||||||   |  | |  ||  |    | ||   
--------------------------gtattgcaatttatttatacatttacatttctcaacc-----tttttcctacaccatcatccctatcattggatgtcagaaccacgcatgtccatgcttgtgttctgtt-tgagctttgaagaaattctgatgggtct-cctgaattttgtagATGAGCAAAGTGGAGCCCTTCCCCCACCTCCTTGGGAAGCTCAGTCAGCGCCAAGCGGCGACATGTCAAATGGC-GGTATGCAGTCTCACCCGGTGTCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86472480|gb|DY238850.1|DY238850
EST:     TCAAGCTGCCAACCCTGTTGTGCCCCTGCCAGAGCAAGCACTGAATTACG                         ATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCACCCAGCGT
genomic: TCAAGCTGCCAACCCTGTTGTGCCCCTGCCAGAGCAAGCACTGAATTACGgtatgtcagg ... aactctgtagATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGT
EST: gi|19821886|gb|BQ047910.1|BQ047910
EST:     TCAAGCTGCCAACCCTGCTGTGCCCCTGCCAGAGCAAGCACTGAATTACG                         ATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGT
genomic: TCAAGCTGCCAACCCTGTTGTGCCCCTGCCAGAGCAAGCACTGAATTACGgtatgtcagg ... aactctgtagATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGT
EST: gi|30160651|gb|CB924380.1|CB924380
EST:     TCAAGCTGCCAACCCTGTTGTGCCCCTGCCAGAGCAAGCACTGAATTACG                         ATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGT
genomic: TCAAGCTGCCAACCCTGTTGTGCCCCTGCCAGAGCAAGCACTGAATTACGgtatgtcagg ... aactctgtagATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGT
EST: gi|71764440|gb|DR962377.1|DR962377
EST:     TCAAGCTGCCAACCCTGTTGTGCCCCTGCCAGAGCAAGCACTGAATTACG                         ATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGT
genomic: TCAAGCTGCCAACCCTGTTGTGCCCCTGCCAGAGCAAGCACTGAATTACGgtatgtcagg ... aactctgtagATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGT
EST: gi|71438882|gb|DR819932.1|DR819932
EST:     TCAAGCTGCCAACCCTGTTGTGCCCCTGCCAGAGCAAGCACTGAATTACG                         ATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGT
genomic: TCAAGCTGCCAACCCTGTTGTGCCCCTGCCAGAGCAAGCACTGAATTACGgtatgtcagg ... aactctgtagATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcttcttttctgcccgaagaaaaaaaagtgatgatagtatccaaactctgtagATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGTCAAACAATGAATTGCCAAATGGCCAATTGGGAAGCTTGCAACCTCTCCC
                  aagaaaaaaaa  TA-rich tract