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...tgagttaccaacttgctggtttactgctgttatgtgcataaaggtcttttctggaccttttaatgatatataaaggcttagtactgttttgatcctccagGTCCAGTTTTTGCCACGGTATCATGACTGAAATTGGTCGCTTCAGCAAAGATATGAAAGAACTACTACAAGAGAAGGTTTTTGTCATCGTTGTTTTAG
species | Zea mays |
transcript | GRMZM2G062024_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCTGGTGGAATTGAGGATCTTTCAGGGAAGGTTCCACAAAAGTTCTCCTT GTCCAGTTTTTGCCACGGTATCATGACTGAAATTGGTCGCTTCAGCAAAGAEST: gi|26557534|gb|CA829769.1|CA829769
genomic: CCTGGTGGAATTGAGGATCTTTCAGGGAAGGTTCCACAAAAGTTCTCCTTgtaagaacct ... gatcctccagGTCCAGTTTTTGCCACGGTATCATGACTGAAATTGGTCGCTTCAGCAAAGA
EST: CCTGGTGGAATTGAGGATCTTTCAGGGAAGGTTCCACAAAAGTTCTCCTT GTCCAGTTTTTGCCACGGTATCATGACTGAAATTGGTCGCTTCAGCAAAGAEST: gi|29577211|gb|CB617323.1|CB617323
genomic: CCTGGTGGAATTGAGGATCTTTCAGGGAAGGTTCCACAAAAGTTCTCCTTgtaagaacct ... gatcctccagGTCCAGTTTTTGCCACGGTATCATGACTGAAATTGGTCGCTTCAGCAAAGA
EST: CCTGGTGGAATTGAGGATCTTTCAGGGAAGGTTCCACAAAAGTTCTCCTT GTCCAGTTTTTGCCACGGTATCATGACTGAAATTGGTCGCTTCAGCAAAGA
genomic: CCTGGTGGAATTGAGGATCTTTCAGGGAAGGTTCCACAAAAGTTCTCCTTgtaagaacct ... gatcctccagGTCCAGTTTTTGCCACGGTATCATGACTGAAATTGGTCGCTTCAGCAAAGA
cttttctggaccttttaatgatatataaaggcttagtactgttttgatcctccagGTCCAGTTTTTGCCACGGTATCATGACTGAAATTGGTCGCTTCAGCAAAGATATGAAAGAACTACTACAAGAGAAGGTTTTTGTCATCGTTGTTTTAG
tcctcc CT-rich tract
ttttaatgatatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagttaccaacttgctggtttactgctgttatgtgcataaaggtcttttctggaccttttaatgatatataaaggcttagtactgttttgatcctccagGTCCAGTTTTTGCCACGGTATCATGACTGAAATTGGTCGCTTCAGCAAAGATATGAAAGAACTACTACAAGAGAAGGTTTTTGTCATCGTTGTTTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - -cttgctg
- - - - - - - - - - - actgctg
- - - - - - - - - - - - - - - - -gtgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgttt