1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgcgcttcttccttatgccaaggcctgtgttttcttcttgtactgctgacatcgtttgatatttttgtattgccctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC
species | Zea mays |
transcript | GRMZM2G061620_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|76280697|gb|DV020265.1|DV020265
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|60339280|gb|DN206253.1|DN206253
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|18173700|gb|BM349088.1|BM349088
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|33092724|gb|CF052718.1|CF052718
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|33103619|gb|CF063579.1|CF063579
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATEST: gi|32944591|gb|CF049410.1|CF049410
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGAT
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|60355834|gb|DN222807.1|DN222807
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|211501745|gb|FL041143.1|FL041143
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|33104092|gb|CF064052.1|CF064052
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|76288771|gb|DV028339.1|DV028339
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|211179390|gb|FL472344.1|FL472344
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|101401580|gb|EB822466.1|EB822466
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|4804466|gb|AI665336.2|AI665336
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|4966941|gb|AI691754.1|AI691754
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCCCTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|211167569|gb|FL481155.1|FL481155
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|32850730|gb|CD990411.1|CD990411
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|6431881|gb|AW172085.1|AW172085
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|211460054|gb|FL445989.1|FL445989
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|211460055|gb|FL445990.1|FL445990
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|16926213|gb|BM079281.1|BM079281
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|16927288|gb|BM080357.1|BM080357
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|78078954|gb|DV507366.1|DV507366
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|88748485|gb|DY532626.1|DY532626
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|78073733|gb|DV502167.1|DV502167
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|33103634|gb|CF063594.1|CF063594
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAEST: gi|211510600|gb|FL470556.1|FL470556
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
EST: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAAT GATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
genomic: TTTATGCGGTTGATTAGTGAGCCACTAGAGGGAGACGAAGAGAATGAAATgtatgcgctt ... cctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGA
gttttcttcttgtactgctgacatcgtttgatatttttgtattgccctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC
ttgccct CT-rich tract
tttgatatttttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcgcttcttccttatgccaaggcctgtgttttcttcttgtactgctgacatcgtttgatatttttgtattgccctgaaccagGATGCTGGATCAGATGGCAGATGCAACTGAGACCATTGCAGTCACTCCAGAGGAGAATGAAGCTATACTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC