1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttgtgatttttttaatgtgctgtgttacactagaatactggattatttactattttagatgcttagtatctatagccgcctaaaaatatgtttgcatcagGATGAAGATGTCAGATACCCCCCGAGTAGGCCATCTCAGGGTGGCTATGGTGCATATAACGCATACATTTCAGCTGCTACCAGGTATGCAACTCTGGGTG
species | Zea mays |
transcript | GRMZM2G060977_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACATGAGCTTGATGGTCACA-CAGTAGTTGTTGATCGTGCGACTCCTAAG GATGAAGATGTCAGATACCCCCCGEST: gi|113702665|gb|EE680169.1|EE680169
genomic: ACATGAGCTTGATGGT-ACAACAGTAGTTGTTGATCGTGCGACTCCTAAGgtaccttgct ... tttgcatcagGATGAAGATGTCAGATACCCCCCG
EST: CACATGAGCTTGATGGTACAACAGTAGTTGTTGATCGTGCGACTCCTAAG GATGAAGATGTCAGATACCCCCCGAGTAGGCCATCTCAGGGTGGCTATGGTEST: gi|32837415|gb|CD977093.1|CD977093
genomic: CACATGAGCTTGATGGTACAACAGTAGTTGTTGATCGTGCGACTCCTAAGgtaccttgct ... tttgcatcagGATGAAGATGTCAGATACCCCCCGAGTAGGCCATCTCAGGGTGGCTATGGT
EST: ACAACAGTAGTTGTTGATCGTGCGACTCCTAAG GATGAAGATGTCAGATACCCCCCGAGTAGGCCATCTCAGGGTGGCTATGGTEST: gi|87152201|gb|DY396990.1|DY396990
genomic: ACAACAGTAGTTGTTGATCGTGCGACTCCTAAGgtaccttgct ... tttgcatcagGATGAAGATGTCAGATACCCCCCGAGTAGGCCATCTCAGGGTGGCTATGGT
EST: CACATGAGCTTGATGGTACAACAGTAGTTGTTGATCGTGCGACTCCTAAG GATGAAGATGTCAGATACCCCC
genomic: CACATGAGCTTGATGGTACAACAGTAGTTGTTGATCGTGCGACTCCTAAGgtaccttgct ... tttgcatcagGATGAAGATGTCAGATACCCCC
tttactattttagatgcttagtatctatagccgcctaaaaatatgtttgcatcagGATGAAGATGTCAGATACCCCCCGAGTAGGCCATCTCAGGGTGGCTATGGTGCATATAACGCATACATTTCAGCTGCTACCAGGTATGCAACTCTGGGTG
gcctaaa putative branch site (score: 97)
taaaaatatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtgatttttttaatgtgctgtgttacactagaatactggattatttactattttagatgcttagtatctatagccgcctaaaaatatgtttgcatcagGATGAAGATGTCAGATACCCCCCGAGTAGGCCATCTCAGGGTGGCTATGGTGCATATAACGCATACATTTCAGCTGCTACCAGGTATGCAACTCTGGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT