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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagcgccaatgtgctcatgtgcagcatagcaagacaaggaacaacactgatgcgacatctcaccttttcatatatgtgtttgttcgtgttccaactgcagGCCGACAATCTAAGGCACCAGACGTTGCATCAGATGCGCCGGATCCTGACCACTCGGCAGGCTGCGCGGTGCTTCCTCTCCATTGGGGAGTACTACAGCC

Basic information

species Zea mays
transcript GRMZM2G060216_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G060216_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os01g64020.1 (Oryza sativa), 3'ss of exon 11
aagcgccaatgtgctcatgtgcagcatagcaagacaaggaacaacact---gatgcgacatctcaccttttcatatatgtgtttgttcgtgttccaactgcagGCCGACAATCTAAGGCACCAGACGTTGCATCAGATGCGCCGGATCCTGACCACTCGGCAGGCTGCGCGGTGCTTCCTCTCCATTGGGGAGTACTACAGCC
    | |||  | |  |  | |   | |    |||| |         |   |    |  ||   |      | | || |||  |   | ||    |  ||||||| |||||||| ||||| || |||||||||||| |||| ||||| || || || |||||||| || ||||| |||||||||||||||||||| ||| |||
--cagacaagatacagaattactatacaattcgacatgtcgttttctttcaggaatgctattcaattccagcttttaggtgactaacc-tggcaaatgtgcagGCTGACAATCTGAGGCAACAAACGTTGCATCAGCTGCGGCGGATTCTAACAACCCGGCAGGCGGCTCGGTGTTTCCTCTCCATTGGGGAGTATTACCGCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgatgcgacatctcaccttttcatatatgtgtttgttcgtgttccaactgcagGCCGACAATCTAAGGCACCAGACGTTGCATCAGATGCGCCGGATCCTGACCACTCGGCAGGCTGCGCGGTGCTTCCTCTCCATTGGGGAGTACTACAGCC
           atctcac  putative branch site (score: 3)
                   ttttcatatat  TA-rich tract