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gtgtgtccttactttctgaatgccttttgaaatatactatctgtgcacctctagagttagtccaaggttccagaacttaacctttttgttttctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGAGGAGCGCCGCCGCTTGAGTATGGCTTTCGACGTG
species | Zea mays |
transcript | GRMZM2G059671_T04 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAG AGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGAEST: gi|76284240|gb|DV023808.1|DV023808
genomic: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAGgtgtgtcctt ... ctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGA
EST: CAATTGTGACTGAAT-CCTTATCAAG AGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGEST: gi|32836824|gb|CD976502.1|CD976502
genomic: CAATTGTGACTGAATACC-TATCAAGgtgtgtcctt ... ctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGG
EST: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAG AGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGAEST: gi|26456437|gb|CA828020.1|CA828020
genomic: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAGgtgtgtcctt ... ctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGA
EST: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAG AGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGAEST: gi|32839244|gb|CD978925.1|CD978925
genomic: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAGgtgtgtcctt ... ctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGA
EST: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAG AGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGAEST: gi|32837172|gb|CD976850.1|CD976850
genomic: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAGgtgtgtcctt ... ctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGA
EST: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAG AGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGAEST: gi|60358265|gb|DN225238.1|DN225238
genomic: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAGgtgtgtcctt ... ctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGA
EST: CTAACCTTTCAATTGTGACTGAATACCTATCAAG AGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGAEST: gi|60337361|gb|DN204334.1|DN204334
genomic: CTAACCTTTCAATTGTGACTGAATACCTATCAAGgtgtgtcctt ... ctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGA
EST: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAG AGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGAEST: gi|32838830|gb|CD978511.1|CD978511
genomic: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAGgtgtgtcctt ... ctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGA
EST: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAG AGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGAEST: gi|32836743|gb|CD976421.1|CD976421
genomic: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAGgtgtgtcctt ... ctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGA
EST: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAG AGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGA
genomic: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAGgtgtgtcctt ... ctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGA
cctctagagttagtccaaggttccagaacttaacctttttgttttctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGAGGAGCGCCGCCGCTTGAGTATGGCTTTCGACGTG
acttaac putative branch site (score: 38)
cctttttgttttctat CT-rich tract
tttttgttttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtccttactttctgaatgccttttgaaatatactatctgtgcacctctagagttagtccaaggttccagaacttaacctttttgttttctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGAGGAGCGCCGCCGCTTGAGTATGGCTTTCGACGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG