1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtttggcactccttatgttctatgactttgtgttgtcagtctatattactgacatcactcttttctttttcagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTGGCACATGATGTTGTTGATGAGGCAGGGGCCTGGAAAAGCAAGCTTCAGCCTGAATCAAGGGAGC
species | Zea mays |
transcript | GRMZM2G059151_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAG GTTCAAAAACTCATCGCAGAATTGAATGAAATTTTGGCACATGATGTTGTTEST: gi|67014279|gb|CO443028.1|CO443028
genomic: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAGgtttggcact ... tctttttcagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTGGCACATGATGTTGTT
EST: GCCTGATTGATTTCATCCCAGA- GTTCAAAAACTCATCGCAGAATTGAATGAAATTTTGGCACATGATGTTGTTEST: gi|31348678|gb|CD433035.1|CD433035
genomic: GCCTGATTGATTTCATCCCAGAGgtttggcact ... tctttttcagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTGGCACATGATGTTGTT
EST: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAG GTTCAAAAACTCATCGCGGAATTGAATGAAATTTTGGCACATGATGTTGTTEST: gi|211507301|gb|FK969868.1|FK969868
genomic: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAGgtttggcact ... tctttttcagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTGGCACATGATGTTGTT
EST: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAG GTTCAAAAACTCATCGCGGAATTGAATGATATTTTGGCACATGATGTTGTTEST: gi|6021533|gb|AW066461.1|AW066461
genomic: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAGgtttggcact ... tctttttcagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTGGCACATGATGTTGTT
EST: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAG GTTCAAAAACTCATCGCGGAATTGAATGAAATTTTGGCACATGATGTTGTTEST: gi|32831581|gb|CD971259.1|CD971259
genomic: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAGgtttggcact ... tctttttcagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTGGCACATGATGTTGTT
EST: ATTGATTTCATCCCAGAG GTTCAAAAACTCATCGCAGAATTGAATGAAATTTTGGCACATGATGTTGTTEST: gi|31353849|gb|CD438206.1|CD438206
genomic: ATTGATTTCATCCCAGAGgtttggcact ... tctttttcagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTGGCACATGATGTTGTT
EST: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAG GTTCAAAAACTCATCGCGGAATTGAATGAAATTTTGGCACATGATGTTGTTEST: gi|6587580|gb|AW244898.1|AW244898
genomic: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAGgtttggcact ... tctttttcagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTGGCACATGATGTTGTT
EST: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAG GTTCAAAAACTCATCGCGGAATTGAATGAAATTTTGGCACATGATGTTGTT
genomic: ACTATGGTGTTATCCTTATACCAGAAGGCCTGATTGATTTCATCCCAGAGgtttggcact ... tctttttcagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTGGCACATGATGTTGTT
tctatgactttgtgttgtcagtctatattactgacatcactcttttctttttcagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTGGCACATGATGTTGTTGATGAGGCAGGGGCCTGGAAAAGCAAGCTTCAGCCTGAATCAAGGGAGC
tactgac putative branch site (score: 589)
catcactcttttcttt CT-rich tract
ttttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggcactccttatgttctatgactttgtgttgtcagtctatattactgacatcactcttttctttttcagGTTCAAAAACTCATCGCGGAATTGAATGAAATTTTGGCACATGATGTTGTTGATGAGGCAGGGGCCTGGAAAAGCAAGCTTCAGCCTGAATCAAGGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT