1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tacccatgtcatgcgtgaactggaaatctatattctgcataaactggaactgtttttttgggaactaagttatcttttttccatgctatgcatattttagATTCCTGAAGAAAAGAAACTGGATTTGCTAAAGACTATTGCTTCAAGTTCACCATATGCTGCAGCACAAGATTCACGTCAGCTGCTTCCATCTGTTGTTC
species | Zea mays |
transcript | GRMZM2G059039_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCAAGTTCCTCAATTACTTCGTTAAACAAATTGTTCCAGCATTTGAGAAG ATTCCTGAAGAAAAGAAACTGGATTTGCTAAAGACTATTGCTTCAAGTTCAEST: gi|32933981|gb|CF038793.1|CF038793
genomic: GCAAGTTCCTCAATTACTTCGTTAAACAAATTGTTCCAGCATTTGAGAAGgtaatcattt ... catattttagATTCCTGAAGAAAAGAAACTGGATTTGCTAAAGACTATTGCTTCAAGTTCA
EST: GCAAGTTCCTCAATTACTTCGTTAAACAAATTGTTCCAGCATTTGAGAAG ATTCCTGAAGAAAAGAAACTGGATTTGCTAAAGACTATTGCTTCAAGTTCAEST: gi|31356580|gb|CD440937.1|CD440937
genomic: GCAAGTTCCTCAATTACTTCGTTAAACAAATTGTTCCAGCATTTGAGAAGgtaatcattt ... catattttagATTCCTGAAGAAAAGAAACTGGATTTGCTAAAGACTATTGCTTCAAGTTCA
EST: GCAAGTTCCTCAATTACTTCGTTAAACAAATTGTTCCAGCATTTGAGAAG ATTCCTGAAGAAAAGAAACTGGATTTGCTAAAGACTATTGCTTCAAGTTCAEST: gi|60398546|gb|DN231362.1|DN231362
genomic: GCAAGTTCCTCAATTACTTCGTTAAACAAATTGTTCCAGCATTTGAGAAGgtaatcattt ... catattttagATTCCTGAAGAAAAGAAACTGGATTTGCTAAAGACTATTGCTTCAAGTTCA
EST: GCAAGTTCCTCAATTACTTCGTTAAACAAATTGTTCCAGCATTTGAGAAG ATTCCTGAAGAAAAGAAACTGGATTTGCTAAAGACTATTGCTTCAAGTTCAEST: gi|31358588|gb|CD442945.1|CD442945
genomic: GCAAGTTCCTCAATTACTTCGTTAAACAAATTGTTCCAGCATTTGAGAAGgtaatcattt ... catattttagATTCCTGAAGAAAAGAAACTGGATTTGCTAAAGACTATTGCTTCAAGTTCA
EST: GCAAGTTCCTCAATTACTTCGTTAAACAAATTGTTCCAGCATTTGAGAAG ATTCCTGAAGAAAAGAAACTGCATTTGCTAAAGACTATTGCTTCAAGTTCA
genomic: GCAAGTTCCTCAATTACTTCGTTAAACAAATTGTTCCAGCATTTGAGAAGgtaatcattt ... catattttagATTCCTGAAGAAAAGAAACTGGATTTGCTAAAGACTATTGCTTCAAGTTCA
ggaactgtttttttgggaactaagttatcttttttccatgctatgcatattttagATTCCTGAAGAAAAGAAACTGGATTTGCTAAAGACTATTGCTTCAAGTTCACCATATGCTGCAGCACAAGATTCACGTCAGCTGCTTCCATCTGTTGTTC
taagttatctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacccatgtcatgcgtgaactggaaatctatattctgcataaactggaactgtttttttgggaactaagttatcttttttccatgctatgcatattttagATTCCTGAAGAAAAGAAACTGGATTTGCTAAAGACTATTGCTTCAAGTTCACCATATGCTGCAGCACAAGATTCACGTCAGCTGCTTCCATCTGTTGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- -ccatgtc
- - - - - atgcgtg
- - - - - - - - - - - - - - - - - ctgcata
- - - - - - - - - - - - - - - - - - - - - - - - actgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaactaa