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gtaatgaatgacctggcctgtaacgatataatagttttgtgtgcaaaattttgtttatggagcttttggtagccattgataaagcattgaagatgttgctcagtttcttctgttattcctatagGTTCCATTCTTTGCTGATGATGAAGAATCTCCAGCAACACCAAAGGCAGATGCTTTTTTCATCCCTAGAGAGAACCCAAGGAACCTGGTAATTCGTCCAA
species | Zea mays |
transcript | GRMZM2G059015_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATCTGATGGCAAG GTTCCATTCTTTGCTGATGATGAAGAATCTCCAGCAACACCAAAGGCAGATEST: gi|32924484|gb|CF029296.1|CF029296
genomic: ATCTGATGGCAAGgtaatgaatg ... attcctatagGTTCCATTCTTTGCTGATGATGAAGAATCTCCAGCAACACCAAAGGCAGAT
EST: AGAAAATATAATCCAATATCTGATGGCAAG GTTCCATTCTTTGCTGATGATGAAGAATCTCCAGCAACACCAAAGGCAGATEST: gi|211139803|gb|FL319394.1|FL319394
genomic: AGAAAATATAATCCAATATCTGATGGCAAGgtaatgaatg ... attcctatagGTTCCATTCTTTGCTGATGATGAAGAATCTCCAGCAACACCAAAGGCAGAT
EST: GAAGGATAAAACTGCTGCCAAGAAAATATAATCCAATATATGATGGCAAG GTTCCATTCTTTGCTGATGATGAAGAATCTCCAGCAACACCAAAGGCAGATEST: gi|32924327|gb|CF029139.1|CF029139
genomic: GAAGGATAAAACTGCTGCCAAGAAAATATAATCCAATATCTGATGGCAAGgtaatgaatg ... attcctatagGTTCCATTCTTTGCTGATGATGAAGAATCTCCAGCAACACCAAAGGCAGAT
EST: ATATAATCCAATATCTGATGGCAAG GTTCCATTCTTTGCTGATGATGAAGAATCTCCAGCAACACCAAAGGCAGATEST: gi|87152934|gb|DY397723.1|DY397723
genomic: ATATAATCCAATATCTGATGGCAAGgtaatgaatg ... attcctatagGTTCCATTCTTTGCTGATGATGAAGAATCTCCAGCAACACCAAAGGCAGAT
EST: GAAGGATAAAACTGCTGCCGAGAAAATATAATCCAATATCTGATGGCAAG GTTCCATTCTTTGCTGATGATGAAGAATCTCCAGCAACACCAAAGGCAGATEST: gi|31354445|gb|CD438802.1|CD438802
genomic: GAAGGATAAAACTGCTGCCAAGAAAATATAATCCAATATCTGATGGCAAGgtaatgaatg ... attcctatagGTTCCATTCTTTGCTGATGATGAAGAATCTCCAGCAACACCAAAGGCAGAT
EST: GAAGGATAAAACTGCTGCCAAGAAAATATAATCCAATATCTGATGGCAAG GTTCCATTCTTTGCTGATGATGAAGAATCTCCAGCAACACCAAAGGCAGATEST: gi|32923769|gb|CF028581.1|CF028581
genomic: GAAGGATAAAACTGCTGCCAAGAAAATATAATCCAATATCTGATGGCAAGgtaatgaatg ... attcctatagGTTCCATTCTTTGCTGATGATGAAGAATCTCCAGCAACACCAAAGGCAGAT
EST: GCTGCCGAGAAAATATAATCCAATATCTGATGGCAAG GTTCCATTCTTTGCTGATGATGAAGAATCTCCAGCAACACCAAAGGCAGAT
genomic: GCTGCCAAGAAAATATAATCCAATATCTGATGGCAAGgtaatgaatg ... attcctatagGTTCCATTCTTTGCTGATGATGAAGAATCTCCAGCAACACCAAAGGCAGAT
tagccattgataaagcattgaagatgttgctcagtttcttctgttattcctatagGTTCCATTCTTTGCTGATGATGAAGAATCTCCAGCAACACCAAAGGCAGATGCTTTTTTCATCCCTAGAGAGAACCCAAGGAACCTGGTAATTCGTCCAA
cattgat putative branch site (score: 244)
tttcttctgttattcc putative PPT
attgataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgaatgacctggcctgtaacgatataatagttttgtgtgcaaaattttgtttatggagcttttggtagccattgataaagcattgaagatgttgctcagtttcttctgttattcctatagGTTCCATTCTTTGCTGATGATGAAGAATCTCCAGCAACACCAAAGGCAGATGCTTTTTTCATCCCTAGAGAGAACCCAAGGAACCTGGTAATTCGTCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA