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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaagatattttgagattgtccttcattatatagttcagtactcttaatgatgtttactttcagGCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG

Basic information

species Zea mays
transcript GRMZM2G058584_T01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89758985|gb|DY687956.1|DY687956
EST:     GTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCTGGAGGAGCTCAG                         GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG
genomic: GTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCTGGAGGAGCTCAGgtactaagat ... ttactttcagGCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG
EST: gi|8516559|gb|BE123284.1|BE123284
EST:     GTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCTGGAGGAGCTCAN                         GCAATCTCAGCAATGGCATGGGGAACTGCATCGTGCCCAAAG
genomic: GTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCTGGAGGAGCTCAGgtactaagat ... ttactttcagGCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG
EST: gi|21331772|gb|BQ487153.1|BQ487153
EST:     GTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCTGGAGGAGCTCAG                         GCAATCTCATTATTGGCATGGGGAACTGCATCGTGCCCAAAG
genomic: GTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCTGGAGGAGCTCAGgtactaagat ... ttactttcagGCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG
EST: gi|23357617|gb|BU645266.1|BU645266
EST:     GTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCTGGAGGAGCTCAG                         GCAATCTCAGCAATGGCATGGGGAACTGCATCGTGCCCAAAG
genomic: GTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCTGGAGGAGCTCAGgtactaagat ... ttactttcagGCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG
EST: gi|38688105|gb|CK145136.1|CK145136
EST:     GTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCTGGAGGAGCTCAG                         GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG
genomic: GTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCTGGAGGAGCTCAGgtactaagat ... ttactttcagGCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG
EST: gi|71432207|gb|DR813257.1|DR813257
EST:     GTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCTGGAGGAGCTCAG                         GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG
genomic: GTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCTGGAGGAGCTCAGgtactaagat ... ttactttcagGCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG
EST: gi|76012899|gb|DT940069.1|DT940069
EST:     GTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCTGGAGGAGCTCAG                         GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG
genomic: GTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCTGGAGGAGCTCAGgtactaagat ... ttactttcagGCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG
EST: gi|211215840|gb|FL096753.1|FL096753
EST:     GTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCTGGAGGAGCTCAG                         GCAATCTCAGCAATGGCATGGGGAACTGCATCGTGCCCAAAG
genomic: GTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCTGGAGGAGCTCAGgtactaagat ... ttactttcagGCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG
EST: gi|32840983|gb|CD980664.1|CD980664
EST:     GAAAGCTGGTGTGACACACATATTGAAAGCTGTAGGAGCTCAG                         GCAATCTCAGCAATGGCATGGGGAACTGCATCGTGCCCAAAG
genomic: GAAAGCTGGTGTGACACACATATTGAAAGCTGGAGGAGCTCAGgtactaagat ... ttactttcagGCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG
EST: gi|38687960|gb|CK144991.1|CK144991
EST:     GTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCTGGAGGAGCTCAG                         GCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG
genomic: GTGCAAAGAAAGCTGGTGTGACACACATATTGAAAGCTGGAGGAGCTCAGgtactaagat ... ttactttcagGCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgagattgtccttcattatatagttcagtactcttaatgatgtttactttcagGCAATCTCAGCAATGGCATGGGGAACTGCATCTTGCCCAAAG
                                 tcttaat  putative branch site (score: 3)
                                            tttactttc  putative PPT
             ttcattatatagtt  TA-rich tract