Sequence
atgc intronic sequence ATGC exonic sequence...ttacttgagtagatatattcgatcttttcaaaatgtgtttttgtggcaaattgttctggactataaatttttgtatattggtgttttacttgctacatagGATGATGATGATATGCTTTGGAGATCTCCTGGCACTCCTGTTTTCACTGCCCCGGAGTGCTGTCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G057084_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os03g50330.1 (Oryza sativa), 3'ss of exon 8
ttacttgagtagatatattcgatcttttcaaaatgtgtttttgtg-----gcaaattgttctggactataaatttttgtatattg-gtgttttacttgctacatagGATGATGATGATATGCTTTGGAGATCTCCTGGCACTCCTGTTTTCACTGCCCCGGAGTGCTGTCAAG
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------ggacggagggagtaagtgtttttaggcaatttcttcgtacaattgtggagtctaatggcttagtactttactgataaagtgttatgtgattgtattgcagGATGATGATGATCTGCTTTGGAGGTCTCCAGGTACTCCTGTTTTCACTGCACCAGAATGCTGTCAAG
upper sequence: GRMZM2G057084_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA11G20690.1 (Glycine max), 3'ss of exon 8
ttacttgagtagatatattcgatcttttcaaaatgtgtttttgtggcaaattgttctggactataaatttttgtatattggtgttttacttgc--tacatagGATGATGATGATATGCTTTGGAGATCTCCTGGCACTCCTGTTTTCACTGCCCCGGAGTGCTGTCAAG
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--agaaccctacatctgatctgaattgggtcattcggatcttgtcctaattcattctttcttcctaacttttacaacaaactttaacagtttcattttgcagGATGATAAAGATGAGCTTCGTCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAGTGTATTTTAG
upper sequence: GRMZM2G057084_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv06s0004g02990.t01 (Vitis vinifera), 3'ss of exon 9
---ttacttgagtagatatattcgatcttttcaaaatgtgtttttgtggcaaattgttctggactataaatttttgtatattggtgtt----ttacttgctacatagGATGATGATGATATGCTTTGGAGATCTCCTGGCACTCCTGTTTTCACTGCCCCGGAGTGCTGTCAAG
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ttgtgttcagagtttttaaatttggtagt---ggaataccttttagttttaaggcgtt---gaatgcaa-ttcttgtgccaccttgttgaaatggtttcttatgcagGATGATAATGATGAGCTCCGCCGTTCTCCTGGCACTCCTGTTTTTACTGCACCAGAGTGCTGTTTAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60349018|gb|DN215991.1|DN215991EST: GTGCCGGCAATGTGAAGATTGGGGATTTCAGTGTTAGCCAGGTTTTTGAG GATGATGATGATATGCTTTGGAGATCTCCTGGCACTCCTGTTTT
genomic: GTGCCGGCAATGTGAAGATTGGGGATTTCAGTGTTAGCCAGGTTTTTGAGgtggtttctg ... tgctacatagGATGATGATGATATGCTTTGGAGATCTCCTGGCACTCCTGTTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcaaattgttctggactataaatttttgtatattggtgttttacttgctacatagGATGATGATGATATGCTTTGGAGATCTCCTGGCACTCCTGTTTTCACTGCCCCGGAGTGCTGTCAAG
ttttactt CT-rich tract
tataaatttttgtata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttacttgagtagatatattcgatcttttcaaaatgtgtttttgtggcaaattgttctggactataaatttttgtatattggtgttttacttgctacatagGATGATGATGATATGCTTTGGAGATCTCCTGGCACTCCTGTTTTCACTGCCCCGGAGTGCTGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC