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...agaagaaacgcattgatcttgaataataattatcattagtttaaacctagatgtggtagttgtattgaaggttcattgatttatctgttgacttgaacagCATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGGCCTGAGAG
species | Zea mays |
transcript | GRMZM2G053531_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATNCAAGGATGCTG CATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGGEST: gi|84969850|gb|DW468264.1|DW468264
genomic: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTGgtaatgatac ... acttgaacagCATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGG
EST: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGGEST: gi|60358119|gb|DN225092.1|DN225092
genomic: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTGgtaatgatac ... acttgaacagCATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGG
EST: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGGEST: gi|74035418|gb|DT535906.1|DT535906
genomic: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTGgtaatgatac ... acttgaacagCATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGG
EST: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGGEST: gi|78109883|gb|DV528299.1|DV528299
genomic: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTGgtaatgatac ... acttgaacagCATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGG
EST: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGGEST: gi|12968885|gb|BG265726.1|BG265726
genomic: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTGgtaatgatac ... acttgaacagCATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGG
EST: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTG CATCATGGAAGGAEST: gi|60341680|gb|DN208653.1|DN208653
genomic: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTGgtaatgatac ... acttgaacagCATCATGGAAGGA
EST: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGGEST: gi|88754483|gb|DY538624.1|DY538624
genomic: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTGgtaatgatac ... acttgaacagCATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGG
EST: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATTCGGCTCAGGTTTAAGCGGGAGAACTGGGEST: gi|113702906|gb|EE680410.1|EE680410
genomic: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTGgtaatgatac ... acttgaacagCATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGG
EST: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGGEST: gi|60394174|gb|DN227044.1|DN227044
genomic: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTGgtaatgatac ... acttgaacagCATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGG
EST: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGGEST: gi|60359057|gb|DN226030.1|DN226030
genomic: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTGgtaatgatac ... acttgaacagCATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGG
EST: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGGEST: gi|116822203|gb|EC865582.1|EC865582
genomic: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTGgtaatgatac ... acttgaacagCATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGG
EST: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGGEST: gi|32846823|gb|CD986504.1|CD986504
genomic: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTGgtaatgatac ... acttgaacagCATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGG
EST: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGGEST: gi|6828185|gb|AW331828.1|AW331828
genomic: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTGgtaatgatac ... acttgaacagCATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGG
EST: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGGEST: gi|78021679|gb|DV490066.1|DV490066
genomic: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTGgtaatgatac ... acttgaacagCATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGG
EST: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGG
genomic: GGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTGgtaatgatac ... acttgaacagCATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGG
cctagatgtggtagttgtattgaaggttcattgatttatctgttgacttgaacagCATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGGCCTGAGAG
tgttgac putative branch site (score: 57)
attgatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaagaaacgcattgatcttgaataataattatcattagtttaaacctagatgtggtagttgtattgaaggttcattgatttatctgttgacttgaacagCATCATGGAAGGACAAACTGATTCGGCTCAGGTCTAAGCGGGAGAACTGGGCCTGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - -aaacgca
- - - - - - - - -cttgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtattg