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gtatgccccacttgtttagataattaattccgcatatccagagtttattttccattttaaatactgatttgtgttaatattatttttcagGGATGCTGCAGAATCCAATGTACCGGCAACAACTACAGGATATGCT
species | Zea mays |
transcript | GRMZM2G053019_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTACTTGCCTGAAGAGATGAGGAACCCAGATTCGTTCAAGT GGATGCTGCAGAATCCAATGTACCGGCAACAACTACAGGATATGCTEST: gi|71440310|gb|DR821360.1|DR821360
genomic: CTACTTGCCTGAAGAGATGAGGAACCCAGATTCGTTCAAGTgtatgcccca ... tatttttcagGGATGCTGCAGAATCCAATGTACCGGCAACAACTACAGGATATGCT
EST: TTATCCCTACTTGCCTGAAGAGATGAGGAACCCAGATTCGTTCAAGT GGATGCTGCAGAATCCAATGTACCGGCAACAACTACAGGATATGCTEST: gi|211266715|gb|FL294978.1|FL294978
genomic: TTATCCCTACTTGCCTGAAGAGATGAGGAACCCAGATTCGTTCAAGTgtatgcccca ... tatttttcagGGATGCTGCAGAATCCAATGTACCGGCAACAACTACAGGATATGCT
EST: CTACTTGCCTGARGAGATGAGGAACCCAGATTCGTTCAAGT GGATGCTGCAGAATCCAATGTACCGGCRACAACTACAGGATATGCTEST: gi|211123549|gb|FL444251.1|FL444251
genomic: CTACTTGCCTGAAGAGATGAGGAACCCAGATTCGTTCAAGTgtatgcccca ... tatttttcagGGATGCTGCAGAATCCAATGTACCGGCAACAACTACAGGATATGCT
EST: CTACTTGCCTGAAGAGATGAGGAACCCAGATTCGTTCAAGT GGATGCTGCAGAATCCAATGTACCGGCAACAACTACAGGATATGCT
genomic: CTACTTGCCTGAAGAGATGAGGAACCCAGATTCGTTCAAGTgtatgcccca ... tatttttcagGGATGCTGCAGAATCCAATGTACCGGCAACAACTACAGGATATGCT
atccagagtttattttccattttaaatactgatttgtgttaatattatttttcagGGATGCTGCAGAATCCAATGTACCGGCAACAACTACAGGATATGCT
ttatttttc CT-rich tract
attttaaatactgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgccccacttgtttagataattaattccgcatatccagagtttattttccattttaaatactgatttgtgttaatattatttttcagGGATGCTGCAGAATCCAATGTACCGGCAACAACTACAGGATATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG