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gtaatttgtatatagtggtttctaatcagtcgattcttcatgagtcatgagggtatgttataacattcgcatatcaactttttttagAGGCTTCTCGTGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAAAAATTCAGTCTAAGATATCCAATTTAGCTGAGAAGCTAAAACATGATTT
species | Zea mays |
transcript | GRMZM2G052875_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAATGTTTTTCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAG AGGCTTCTCGCGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAAEST: gi|211178585|gb|FL326372.1|FL326372
genomic: GAATGTTTTCCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAGgtaatttgta ... ctttttttagAGGCTTCTCGTGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAA
EST: GAATGTTTTTCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAG AGGCTTCTCGCGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAAEST: gi|211084967|gb|FL399106.1|FL399106
genomic: GAATGTTTTCCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAGgtaatttgta ... ctttttttagAGGCTTCTCGTGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAA
EST: TTTTTAGGACCCCTGTAGATTTGTCAG AGGCTTCTCGTATTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAAEST: gi|211072830|gb|FL342711.1|FL342711
genomic: TTTTTAGGACCCCTGTAGATTTGTCAGgtaatttgta ... ctttttttagAGGCTTCTCGTGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAA
EST: GAATGTTTTTCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAG AGGCTTCTCGCGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAAEST: gi|31359162|gb|CD443519.1|CD443519
genomic: GAATGTTTTCCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAGgtaatttgta ... ctttttttagAGGCTTCTCGTGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAA
EST: GAATGTTTTTCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAG AGGCTTCTCGCGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAAEST: gi|67026048|gb|CO454797.1|CO454797
genomic: GAATGTTTTCCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAGgtaatttgta ... ctttttttagAGGCTTCTCGTGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAA
EST: GAATGTTTTTCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAG AGGCTTCTCGCGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAA
genomic: GAATGTTTTCCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAGgtaatttgta ... ctttttttagAGGCTTCTCGTGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAA
attcttcatgagtcatgagggtatgttataacattcgcatatcaactttttttagAGGCTTCTCGTGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAAAAATTCAGTCTAAGATATCCAATTTAGCTGAGAAGCTAAAACATGATTT
ttataac putative branch site (score: 2)
cttttttt putative PPT
atatcaacttttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttgtatatagtggtttctaatcagtcgattcttcatgagtcatgagggtatgttataacattcgcatatcaactttttttagAGGCTTCTCGTGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAAAAATTCAGTCTAAGATATCCAATTTAGCTGAGAAGCTAAAACATGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC