1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...attttgatggtcccccgcatctgttctctatagtccatttatgttggtatacggctagtagacaagttctgtttatttatcagtttttttcgttttgtagAGTAAAAGGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCTGACATT
species | Zea mays |
transcript | GRMZM2G052546_T07 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGGCTGCTACAG AGTAAAAGGGCTTGCTTTCCGAAGTTGGAAGCCATTEST: gi|148970824|gb|EE021591.2|EE021591
genomic: TGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGGCTGCTACAGgtgattcatt ... cgttttgtagAGTAAAAGGGCTTGCTTTCCGAAGTTGGAAGCCATT
EST: TGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGGCTGCTACAG AGTAAAAGGGCTTGCTTTCCGAAGTTGGAAAGC-ATTAAGTTGGCAACTGCEST: gi|21621474|gb|BQ619480.1|BQ619480
genomic: TGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGGCTGCTACAGgtgattcatt ... cgttttgtagAGTAAAAGGGCTTGCTTTCCGAAGTTGGAA-GCCATTAAGTTGGCAACTGC
EST: GT-CTGGATTNCT-GGGTACAGTCTCAATGAAGGACATCGGCTGCTACAG AGTAAAAGGGCNTTGCTTNNCGA-GTTGGAAGCCATTAAGTTTGCAACTGCEST: gi|67023551|gb|CO452300.1|CO452300
genomic: GTTCTGGATT-CTTGGGTACAGTCTCAATGAAGGACATCGGCTGCTACAGgtgattcatt ... cgttttgtagAGTAAAAGGGC-TTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGC
EST: TGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGGCTGCTACAG AGTAAAAGGGCTTGCTTTCCTAAGTTGGAAGCCATTAAGTTGGCAACTGCTEST: gi|32833578|gb|CD973256.1|CD973256
genomic: TGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGGCTGCTACAGgtgattcatt ... cgttttgtagAGTAAAAGGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCT
EST: AGTCTCAATGAAGGACATCGGCTGCTACAG AGTAAAAGGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCTEST: gi|74234762|gb|DT642676.1|DT642676
genomic: AGTCTCAATGAAGGACATCGGCTGCTACAGgtgattcatt ... cgttttgtagAGTAAAAGGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCT
EST: TGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGGCTGCTACAG AGTAAAAGGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCTEST: gi|32833853|gb|CD973531.1|CD973531
genomic: TGTTCTGGATTCTTGGGTACAGTCTCAATGAAGGACATCGGCTGCTACAGgtgattcatt ... cgttttgtagAGTAAAAGGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCT
EST: ACAGTCTCAATGAAGGACATCGGCTGCTACAG AGTAAAAGGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCTEST: gi|33091895|gb|CF051889.1|CF051889
genomic: ACAGTCTCAATGAAGGACATCGGCTGCTACAGgtgattcatt ... cgttttgtagAGTAAAAGGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCT
EST: ACAGTCTCAATGAAGGACATCGGCTGCTACAG AGTAAAAGGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCT
genomic: ACAGTCTCAATGAAGGACATCGGCTGCTACAGgtgattcatt ... cgttttgtagAGTAAAAGGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCT
ggtatacggctagtagacaagttctgtttatttatcagtttttttcgttttgtagAGTAAAAGGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCTGACATT
tttttttcgttttgt CT-rich tract
tgtttatttatcagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttgatggtcccccgcatctgttctctatagtccatttatgttggtatacggctagtagacaagttctgtttatttatcagtttttttcgttttgtagAGTAAAAGGGCTTGCTTTCCGAAGTTGGAAGCCATTAAGTTGGCAACTGCTGACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG