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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagcgaaaaatgcttcctctgaagaatcaacgggagcttagggtcctgcaacccaaaagcacacacaccaatttttttcccttcctcctttcgctgacacgtgttccaaccagcagGCCGCCTGCAAAATAGCTGGACGCAGCATCAACGCGGCCGTTATCCAGAGCGTTGTTCTTGGATGTACCACGCACTGCCCCGGACAG

Basic information

species Zea mays
transcript GRMZM2G052476_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052476_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os03g55890.1 (Oryza sativa), 3'ss of exon 9
gtaaagcgaaaaatgcttcctctgaagaatcaacgggagcttagggtcctgcaacccaaaagcacacacaccaatttttttcccttcctcctttcgctgacacgtgttccaaccagcagGCCGCCTGCAAAATAGCTGGACGCAGCATCAACGCGGCCGTTATCCAGAGCGTTGTTCTTGGATGTACCACGCACTGCCCCGGACAG
       | |||    ||||| || |||||||| || |        || || | |  ||       || || || ||| |||         |||| ||||||  |||||  |||| ||||| ||||||||||| |||||||| |||||||| |  || |||||||||||| | ||||||||||| | |||  |||| || ||||||
-------gtaaacattttcctttgtagaatcaatggaatgcacctttcgtgta-cttaa-----ttcagacgaagtttcttc---------tttccctgacatctgttc--acca-cagGCTGCCTGCAAAATTGCTGGACGGAGCATCAATGTAGCTGTTATCCAGAGCATGGTTCTTGGATGCAACACATACTGTCCTGGACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481510|gb|EY254342.1|EY254342
EST:     CTTATCTGGAGAACGGCGTCCCACAGAACAAAACATCCCTGCTTGCTAAG                         GCCGCCTGCAAAATAGCTGGACGCAGCATCAACGCGGCCGTTATCCAGAGC
genomic: CTTATCTGGAGAACGGCGTCCCACAGAACAAAACATCCCTGCTTGCTAAGgtaaagcgaa ... caaccagcagGCCGCCTGCAAAATAGCTGGACGCAGCATCAACGCGGCCGTTATCCAGAGC
EST: gi|160481374|gb|EY254288.1|EY254288
EST:     CTTATCTGGAGAACGGCGTCCCACAGAACAAAACATCCCTGCTTGCTAAG                         GCCGCCTGCAAAATAGCTGGACGCAGCATCAACGCGGCCGTTATCCAGAGC
genomic: CTTATCTGGAGAACGGCGTCCCACAGAACAAAACATCCCTGCTTGCTAAGgtaaagcgaa ... caaccagcagGCCGCCTGCAAAATAGCTGGACGCAGCATCAACGCGGCCGTTATCCAGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacacaccaatttttttcccttcctcctttcgctgacacgtgttccaaccagcagGCCGCCTGCAAAATAGCTGGACGCAGCATCAACGCGGCCGTTATCCAGAGCGTTGTTCTTGGATGTACCACGCACTGCCCCGGACAG
                              cgctgac  putative branch site (score: 3)
        aattttttt  TA-rich tract