1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gctgatttgttttcgctgaaaaatggtttactgatccgttttgttcactctcatcatttaaataggtttgccctaatagttgccatttggtgctttgcagTTATTGATTTCATTGACAGTGAAGCTGTTGATGATGCATGGGCTGTGGTATCATATTTGGGTGAGGCGGATTGTCTTCTTACTGGTGGTCCAGTCGCATC
species | Zea mays |
transcript | GRMZM2G051138_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACAAGCACACGGAAAAGTACGAACAGTTGTGGATTTTCTTTATGAAAATG TTATTGATTTCATTGACAGTGAAGCTGTTGATGATGCATGGGCTGTGGTATEST: gi|91875851|gb|EB405808.1|EB405808
genomic: ACAAGCACACGGAAAAGTACGAACAGTTGTGGATTTTCTTTATGTAAATGgtaagtaact ... tgctttgcagTTATTGATTTCATTGACAGTGAAGCTGTTGATGATGCATGGGCTGTGGTAT
EST: AAGCACACGGAAAAGTACGAACAGTTGGGGATTTTCTTTATGAAAATG TTATTGATTTCATTGACAGTGAAGCTGTTGATGATGCATGGGCTGTGGTATEST: gi|78122197|gb|DV540581.1|DV540581
genomic: AAGCACACGGAAAAGTACGAACAGTTGTGGATTTTCTTTATGTAAATGgtaagtaact ... tgctttgcagTTATTGATTTCATTGACAGTGAAGCTGTTGATGATGCATGGGCTGTGGTAT
EST: ACAAGCACACGGAAAAGTACGAACAGTTGTGGATTTTCTTTATGAAAATG TTATTGATTTCATTGACAGTGAAGCTGTTGATGATGCATGGGCTGTGGTATEST: gi|166587328|gb|EG226754.1|EG226754
genomic: ACAAGCACACGGAAAAGTACGAACAGTTGTGGATTTTCTTTATGTAAATGgtaagtaact ... tgctttgcagTTATTGATTTCATTGACAGTGAAGCTGTTGATGATGCATGGGCTGTGGTAT
EST: ACAAGCACACGGAAAAGTACGAACAGTTGTGGATTTTCTTTATGAAAATG TTATTGATTTC
genomic: ACAAGCACACGGAAAAGTACGAACAGTTGTGGATTTTCTTTATGTAAATGgtaagtaact ... tgctttgcagTTATTGATTTC
cactctcatcatttaaataggtttgccctaatagttgccatttggtgctttgcagTTATTGATTTCATTGACAGTGAAGCTGTTGATGATGCATGGGCTGTGGTATCATATTTGGGTGAGGCGGATTGTCTTCTTACTGGTGGTCCAGTCGCATC
ccctaat putative branch site (score: 3)
tcatcatttaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgatttgttttcgctgaaaaatggtttactgatccgttttgttcactctcatcatttaaataggtttgccctaatagttgccatttggtgctttgcagTTATTGATTTCATTGACAGTGAAGCTGTTGATGATGCATGGGCTGTGGTATCATATTTGGGTGAGGCGGATTGTCTTCTTACTGGTGGTCCAGTCGCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG