1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtattttctataatccaactagtattttgttttttcaccagcaaacatcaaaccttacaaccaatgtgatatagATTGCTAGGTACAAGGGGCAAAGGAAAATTGCAGATCCTGGTTTCCAAAACCCTCAATGGGTTGACGGGGAGCTTTTGATACTAGATGGAAAG
species | Zea mays |
transcript | GRMZM2G048435_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AACACTATCGGCTCCCTCATAAGGGAATTATCCCTAGAGAACTTGGAGTG ATTGCTAGGTACAAGGGGCAAAGGAAAATTGCAGATCCTGGTTTCCAAAACEST: gi|60350848|gb|DN217821.1|DN217821
genomic: AACACTATCGGCTCCCTCATAAGGGAATTATCCCTAGAGAACTTGGAGTGgtattttcta ... tgtgatatagATTGCTAGGTACAAGGGGCAAAGGAAAATTGCAGATCCTGGTTTCCAAAAC
EST: AACACTATCGGCTCCCTCATAAGGGAATTATCCCTAGAGAACTTGGAGTG ATTGCTAGGTACAAGGGGCAAAGGAAAATTGCAGATCCTGGTTTCCAAAACEST: gi|113704299|gb|EE681803.1|EE681803
genomic: AACACTATCGGCTCCCTCATAAGGGAATTATCCCTAGAGAACTTGGAGTGgtattttcta ... tgtgatatagATTGCTAGGTACAAGGGGCAAAGGAAAATTGCAGATCCTGGTTTCCAAAAC
EST: AACACTATCGGCTCCCTCATAAGGGAATTATCCCTAGAGAACTTGGAGTG ATTGCTAGGTACAAGGGGCAAAGGAAAATTGCAGATCCTGGTTTCCAAAACEST: gi|32928804|gb|CF033616.1|CF033616
genomic: AACACTATCGGCTCCCTCATAAGGGAATTATCCCTAGAGAACTTGGAGTGgtattttcta ... tgtgatatagATTGCTAGGTACAAGGGGCAAAGGAAAATTGCAGATCCTGGTTTCCAAAAC
EST: AACACTATCGGCTCCCTCATAAGGGAATTATCCCTAGAGAACTTGGAGTG ATTGCTAGGTAEST: gi|16926571|gb|BM079639.1|BM079639
genomic: AACACTATCGGCTCCCTCATAAGGGAATTATCCCTAGAGAACTTGGAGTGgtattttcta ... tgtgatatagATTGCTAGGTA
EST: CTCCCTCATAAGGGAATTATCCCTAGAGAACTTGGAGTG ATTGCTAGGTACAAGGGGCAAAGGAAAATTGCAGATCCTGGTTTCCAAAAC
genomic: CTCCCTCATAAGGGAATTATCCCTAGAGAACTTGGAGTGgtattttcta ... tgtgatatagATTGCTAGGTACAAGGGGCAAAGGAAAATTGCAGATCCTGGTTTCCAAAAC
tagtattttgttttttcaccagcaaacatcaaaccttacaaccaatgtgatatagATTGCTAGGTACAAGGGGCAAAGGAAAATTGCAGATCCTGGTTTCCAAAACCCTCAATGGGTTGACGGGGAGCTTTTGATACTAGATGGAAAG
accttac putative branch site (score: 103)
ttttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttctataatccaactagtattttgttttttcaccagcaaacatcaaaccttacaaccaatgtgatatagATTGCTAGGTACAAGGGGCAAAGGAAAATTGCAGATCCTGGTTTCCAAAACCCTCAATGGGTTGACGGGGAGCTTTTGATACTAGATGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA