1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtatgtggaagtggacgaaaaaattggtggaaagaatttttgcctcttcaatattaggtataggtttagcattttgcttacatctgctgtacttctctagGTTAGTCCATGTACAGAGCGAGCTGTACTTGATCAACTTGTTGGTTACCTGGAATCTCGATTGGCTGGATATCCAACAACTTTGGATGAAGATGAAGCTA
species | Zea mays |
transcript | GRMZM2G047695_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATCCTGATGAAATGCAGTCTATACTCTCTTCTGAAGGAGATACATGTCCA GTTAGTCCATGTACAGAGCGAGCTGTACTTGATCAACTTGTTGGTTACCTGEST: gi|71449280|gb|DR830330.1|DR830330
genomic: ATCCTGATGAAATGCAGTCTATACTCTCTTCTGAAGGAGATACATGTCCAgtaagtttgc ... acttctctagGTTAGTCCATGTACAGAGCGAGCTGTACTTGATCAACTTGTTGGTTACCTG
EST: ATCCTGATGAAATGCAGTCTATACTCTCTTCTGAAGGAGATACATGTCCA GTTAGTCCATGTACAGAGCGAGCTGTACTTGATCAACTTGTTGGTTACCTGEST: gi|15209056|gb|BI430940.1|BI430940
genomic: ATCCTGATGAAATGCAGTCTATACTCTCTTCTGAAGGAGATACATGTCCAgtaagtttgc ... acttctctagGTTAGTCCATGTACAGAGCGAGCTGTACTTGATCAACTTGTTGGTTACCTG
EST: ATCCTGATGAAATGCAGTCTATACTCTCTTCTGAAGGAGATACATGTCCA GTTAGTCCATGTACAGAGCGAGCTGTACTTGATCAACTTGTTGGTTACCTG
genomic: ATCCTGATGAAATGCAGTCTATACTCTCTTCTGAAGGAGATACATGTCCAgtaagtttgc ... acttctctagGTTAGTCCATGTACAGAGCGAGCTGTACTTGATCAACTTGTTGGTTACCTG
cttcaatattaggtataggtttagcattttgcttacatctgctgtacttctctagGTTAGTCCATGTACAGAGCGAGCTGTACTTGATCAACTTGTTGGTTACCTGGAATCTCGATTGGCTGGATATCCAACAACTTTGGATGAAGATGAAGCTA
tgcttac putative branch site (score: 84)
tacttctct putative PPT
atatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtggaagtggacgaaaaaattggtggaaagaatttttgcctcttcaatattaggtataggtttagcattttgcttacatctgctgtacttctctagGTTAGTCCATGTACAGAGCGAGCTGTACTTGATCAACTTGTTGGTTACCTGGAATCTCGATTGGCTGGATATCCAACAACTTTGGATGAAGATGAAGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC