1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gcaagtatttcttatatcatctcccagatttatccattatttgcttgtgtttcaccttcacatttcttgtgtttctaatgtgggaagcaatcttcatgtatgcataccagGTATGTTTTCTGCTGTTCCTACTCTCATAATGTCGCATCAAAAGGCAAATTCATCGCATTCGTGTCAGCACAAGCGGAGACTGATAATCCAGAGAAGGAA
species | Zea mays |
transcript | GRMZM2G047431_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGAAGCAACTTGGCCGCAGATCAGACAT GTATGTTTTCTGCTGTTCCTACTCTCATAATGTCGCATCAAAAGGCAAATTEST: gi|211044538|gb|FL475091.1|FL475091
genomic: AGAAGCAACTTGGCCGCAGATCAGACATgcaagtattt ... tgcataccagGTATGTTTTCTGCTGTTCCTACTCTCATAATGTCGCATCAAAAGGCAAATT
EST: TCAGTACAGATCATATTACCACAGAAGCAACTTGGCCGCAGATCAGACAT GTATGTTTTCTGCTGTTCCTACTCTCATAATGTCGCATCAAAAGGCAAATTEST: gi|4804534|gb|AI665406.2|AI665406
genomic: TCAGTACAGATCATATTACCACAGAAGCAACTTGGCCGCAGATCAGACATgcaagtattt ... tgcataccagGTATGTTTTCTGCTGTTCCTACTCTCATAATGTCGCATCAAAAGGCAAATT
EST: AGAAGCAACTTGGCCGCAGATCAGACAT GTATGTTTTCTGCTGTTCCTACTCTCATAATGTCGCATCAAAAGGCAAATTEST: gi|32832146|gb|CD971824.1|CD971824
genomic: AGAAGCAACTTGGCCGCAGATCAGACATgcaagtattt ... tgcataccagGTATGTTTTCTGCTGTTCCTACTCTCATAATGTCGCATCAAAAGGCAAATT
EST: TACAGATCATATTACCACAGAAGCAACTTGGCCGCAGATCAGACAT GTATGTTTTCTGCTGTTCCTACTCTCATAATGTCGCATCAAAAGGCAAATTEST: gi|211340571|gb|FL245012.1|FL245012
genomic: TACAGATCATATTACCACAGAAGCAACTTGGCCGCAGATCAGACATgcaagtattt ... tgcataccagGTATGTTTTCTGCTGTTCCTACTCTCATAATGTCGCATCAAAAGGCAAATT
EST: TCAGTACAGATCATATTACCACAGAAGCAACTTGGCCGCAGATCAGACAT GTATGTTTTCTGCTGTTCCTACTCTCATAATGTCGCATCAAAAGGCAAATT
genomic: TCAGTACAGATCATATTACCACAGAAGCAACTTGGCCGCAGATCAGACATgcaagtattt ... tgcataccagGTATGTTTTCTGCTGTTCCTACTCTCATAATGTCGCATCAAAAGGCAAATT
cttcacatttcttgtgtttctaatgtgggaagcaatcttcatgtatgcataccagGTATGTTTTCTGCTGTTCCTACTCTCATAATGTCGCATCAAAAGGCAAATTCATCGCATTCGTGTCAGCACAAGCGGAGACTGATAATCCAGAGAAGGAA
ttctaat putative branch site (score: 178)
tttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtatttcttatatcatctcccagatttatccattatttgcttgtgtttcaccttcacatttcttgtgtttctaatgtgggaagcaatcttcatgtatgcataccagGTATGTTTTCTGCTGTTCCTACTCTCATAATGTCGCATCAAAAGGCAAATTCATCGCATTCGTGTCAGCACAAGCGGAGACTGATAATCCAGAGAAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA