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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcattcagttatgaggatattgaaagctctcttttgtatgctgataataattttgtatctttttttcagCTTTATTGAAGCAACAACGCGTTGATCCCAAGGGAGCTGCAAAAAGCACCACTCCAGTAAATGAGGAAGTTCCTCCTTTGCTTGATGGCGGTGGGAAGCT

Basic information

species Zea mays
transcript GRMZM2G047310_T02
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76284001|gb|DV023569.1|DV023569
EST:     TAATGCTGCTGGGAACCCTGGCACAGAGGAAGGGCGGGGAAAAGTTGCCG                         CTTTATTGAAGCAACAACGCGTTGATCCCAAGGGAGCTGCAAAAAGCACCA
genomic: TAATGCTGCTGGGAACCCTGGCACAGAGGAAGGGCGGGGAAAAGTTGCCGgtatgtcatt ... tttttttcagCTTTATTGAAGCAACAACGCGTTGATCCCAAGGGAGCTGCAAAAAGCACCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatattgaaagctctcttttgtatgctgataataattttgtatctttttttcagCTTTATTGAAGCAACAACGCGTTGATCCCAAGGGAGCTGCAAAAAGCACCACTCCAGTAAATGAGGAAGTTCCTCCTTTGCTTGATGGCGGTGGGAAGCT
                        tgctgat  putative branch site (score: 3)
                                    ttttgtatcttttttt  putative PPT
                           tgataataattttgta  TA-rich tract