1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgctcatgctgtaggtggcacgcaacaatacaacataatcttttaatgtaccagtctgttggttagaaatgttctcatgcgtttcatgtattctatacagCTTGACGCATGTGCTCATCCCTTCTTCGATGAGCTGCGGACACCGAACGCACGCCTACCAAACGGCCGCCCGTTCCCTCCGCTCTTTAACTTCAAGCACG
species | Zea mays |
transcript | GRMZM2G045330_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACCTTGCTTCTCGTCTCCTTCAGTATTCACCAAGTCTTCGCTGCTCTGCT CTTGACGCATGTGCTCATCCCTTCTTCGATGAGCTGCGGACACCGAACGCAEST: gi|211318161|gb|FL216119.1|FL216119
genomic: ACCTTGCTTCTCGTCTCCTTCAGTATTCACCAAGTCTTCGCTGCTCTGCTgtgagtactt ... ttctatacagCTTGACGCATGTGCTCATCCCTTCTTCGATGAGCTGCGGACACCGAACGCA
EST: ACCTTGCTTCCCGTCTCCTTCAGTATTCACCAAGTCTTCGCTGCTCTGCT CTTGACGCATGTGCTCATCCCTTCTTCGATGAGCTGCGGACACCGAATGCAEST: gi|20508268|gb|BQ279947.1|BQ279947
genomic: ACCTTGCTTCTCGTCTCCTTCAGTATTCACCAAGTCTTCGCTGCTCTGCTgtgagtactt ... ttctatacagCTTGACGCATGTGCTCATCCCTTCTTCGATGAGCTGCGGACACCGAACGCA
EST: ACCTTGCTTCTCGTCTCCTTCAGTATTCACCAAGTCTTCGCTGCTCTGCT CTTGACGCATGTGCTCATCCCTTCTTCGATGAGCTGCGGACACCGAATGCAEST: gi|67028577|gb|CO457326.1|CO457326
genomic: ACCTTGCTTCTCGTCTCCTTCAGTATTCACCAAGTCTTCGCTGCTCTGCTgtgagtactt ... ttctatacagCTTGACGCATGTGCTCATCCCTTCTTCGATGAGCTGCGGACACCGAACGCA
EST: ACCTTGCTTCCCGTCTCCTTCAGTATTCACCAAGTCTTCGTTGCTCTGCT CTTGACGCATGTGCTCATCCCTTCTTCGATGAGCTGCGGACACCGAATGCA
genomic: ACCTTGCTTCTCGTCTCCTTCAGTATTCACCAAGTCTTCGCTGCTCTGCTgtgagtactt ... ttctatacagCTTGACGCATGTGCTCATCCCTTCTTCGATGAGCTGCGGACACCGAACGCA
atgtaccagtctgttggttagaaatgttctcatgcgtttcatgtattctatacagCTTGACGCATGTGCTCATCCCTTCTTCGATGAGCTGCGGACACCGAACGCACGCCTACCAAACGGCCGCCCGTTCCCTCCGCTCTTTAACTTCAAGCACG
ttttaat putative branch site (score: 64)
tattctata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctcatgctgtaggtggcacgcaacaatacaacataatcttttaatgtaccagtctgttggttagaaatgttctcatgcgtttcatgtattctatacagCTTGACGCATGTGCTCATCCCTTCTTCGATGAGCTGCGGACACCGAACGCACGCCTACCAAACGGCCGCCCGTTCCCTCCGCTCTTTAACTTCAAGCACG
- - catgctg
- - - - - - - - -gcacgca
- - - - - - - - - - - - - - - caacata
- - - - - - - - - - - - - - - - - - - - - - - tgtacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatgt