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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagcatgcattttgagacaaatcctcgcgttttattcccctttcttcttttttttttacttaccagtgccatgcgtgtctacagGTTCGAGTTGCAGATCCTACGTTCTTAGGGTACTTCATTGACAAGGGCGCATCTTCTGCCGCCAAAGTGGTTAGGAAG

Basic information

species Zea mays
transcript GRMZM2G044629_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044629_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA08G09170.1 (Glycine max), 3'ss of exon 9
---------gtgagagcatgc-attttgagacaaatcctcgcgttttattcccctttctt-cttttttttttacttaccagtgccatgcgtgtct---acagGTTCGAGTTGCAGATCCTACGTTCTTAGGGTACTTCATTGACAAGGGCGCATCTTCTGCCGCCAAAGTGGTTAGGAAG
          |    || | | |||||      | |  ||   |||  |   |  || |  ||| || ||| |   |  | ||    |  | | |   ||||||||||||||| ||||| || || ||||| ||||||||||| || || |   || |||| || ||||| ||  | |||
gtaatttattttcttgcttcctatttttctctcattaatcaattttcctggtcagttatcacttcttatttaaagaaatattgattaggatttgtgaaacagGTTCGAGTTGCTGATCCAACTTTTTTAGGTTACTTCATTGATAAAGGTGTTGCTGCTGCTGCAAAAGTTGTCCGTAAG

upper sequence: GRMZM2G044629_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA05G26240.1 (Glycine max), 3'ss of exon 9
-----gtgagagcatgcattttgag-acaaatcctcgcgttttattcccc--tttcttcttttttttttacttaccagtgccatgcgtgtct---acagGTTCGAGTTGCAGATCCTACGTTCTTAGGGTACTTCATTGACAAGGGCGCATCTTCTGCCGCCAAAGTGGTTAGGAAG
      |     | ||| |  |    |    ||     |||||  |   |  ||    ||| || ||| |   |  | ||    |  | | |   ||||||||||||||| ||||| || || ||||| ||||||||||| || || |   || |||| || ||||| ||  | |||
gtaatttattttcttgcttcctatttatctctcaatcagttttccttgtcagttatcacttcttatttaaagaaatattgattaggatttgtgaaacagGTTCGAGTTGCCGATCCAACTTTTTTAGGTTACTTCATTGATAAAGGTGTTGCTGCTGCTGCAAAAGTTGTCCGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40337292|gb|CK371362.1|CK371362
EST:     CCGCGCGGGGTGTGAAATACGTAGATTGCTACGGAGTTGACAACGCGCTG                         GTTCGAGTTGCAGATCCTACGTTCTTAGGGTACTTCATTGAC
genomic: CCGCGCGGGGTGTGAAATACGTAGATTGCTACGGAGTTGACAACGCGCTGgtgagagcat ... gtgtctacagGTTCGAGTTGCAGATCCTACGTTCTTAGGGTACTTCATTGAC
EST: gi|32941368|gb|CF046187.1|CF046187
EST:     CCGCGCGGGGTGTGAAATACGTAGATTGCTACGGAGTTGACAACGCGCTG                         GTTCGAGTTGCAGATCCTACGTTCTTAGGGTA
genomic: CCGCGCGGGGTGTGAAATACGTAGATTGCTACGGAGTTGACAACGCGCTGgtgagagcat ... gtgtctacagGTTCGAGTTGCAGATCCTACGTTCTTAGGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttattcccctttcttcttttttttttacttaccagtgccatgcgtgtctacagGTTCGAGTTGCAGATCCTACGTTCTTAGGGTACTTCATTGACAAGGGCGCATCTTCTGCCGCCAAAGTGGTTAGGAAG
                           tacttac  putative branch site (score: 1)
           tttcttcttttttttt  TA-rich tract