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gttagtaatgaaaatttctttcctagtgctatgtttatattctgctttgcagtgatgcagatttttctctttattgaacagTAATATCAGCCTCTGTAGGAGTGTCAAGCGTCAACTTTGTTCTACATGATTAAATTATGGGCGTGTTCGGCTGGCTACAAGCCGACACTGTTGCAGCTGT
species | Zea mays |
transcript | GRMZM2G044348_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG TAATATCAGCCTCTGTAGGAGTGTCAAGCGTCAACTTTGTTTTACATGATTEST: gi|78088712|gb|DV517105.1|DV517105
genomic: CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaatg ... tattgaacagTAATATCAGCCTCTGTAGGAGTGTCAAGCGTCAACTTTGTTCTACATGATT
EST: CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG TAATATCAGCCTCTGTAGGAGTGTCAAGCGTCAACTTTGTTCTACATGATT
genomic: CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaatg ... tattgaacagTAATATCAGCCTCTGTAGGAGTGTCAAGCGTCAACTTTGTTCTACATGATT
tgctatgtttatattctgctttgcagtgatgcagatttttctctttattgaacagTAATATCAGCCTCTGTAGGAGTGTCAAGCGTCAACTTTGTTCTACATGATTAAATTATGGGCGTGTTCGGCTGGCTACAAGCCGACACTGTTGCAGCTGT
tttttctctttatt CT-rich tract
atttttctctttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtaatgaaaatttctttcctagtgctatgtttatattctgctttgcagtgatgcagatttttctctttattgaacagTAATATCAGCCTCTGTAGGAGTGTCAAGCGTCAACTTTGTTCTACATGATTAAATTATGGGCGTGTTCGGCTGGCTACAAGCCGACACTGTTGCAGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG