1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaacctggaactactcatgcatgggttctcttctgtgtcacagggtcgcttcgcttcactctctctggtctggtttgctgctaactaggattttgtttatttttgcagAACTTGATTTATGGGCTAGAGAAGTTCTTGTAGTGAACAACAAACAACCAATGCAAAACATCGACAGGCAACAGGCAAGGCAGATATCATCTGACGTCGC
species | Zea mays |
transcript | GRMZM2G044247_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCCTGATGCCAGGACTGATCCTGGCGATACGGAAGGTGGTGCGGTTCAAG AACTTGATTTATGGGCTAGAGAAGTTCTTGTAGTGAACAACAAACAACCAAEST: gi|211144011|gb|FL467385.1|FL467385
genomic: GCCTGATGCCAGGACTGATCCTGGCGATACGGAAGGTGGTGCGGTTCAAGgtaacctgga ... atttttgcagAACTTGATTTATGGGCTAGAGAAGTTCTTGTAGTGAACAACAAACAACCAA
EST: GCCTGATGCCAGGACTGATCCTGGCGATACGGAAGGTGGTGCGGTTCAAG AACTTGATTTATGGGCTAGAGAAGTTCTTGTAGTGAACAACAAACAACCAAEST: gi|18175349|gb|BM350700.1|BM350700
genomic: GCCTGATGCCAGGACTGATCCTGGCGATACGGAAGGTGGTGCGGTTCAAGgtaacctgga ... atttttgcagAACTTGATTTATGGGCTAGAGAAGTTCTTGTAGTGAACAACAAACAACCAA
EST: GACTGATCCTGGCGATACGGAAGGTGGTGCGGTTCAAG AACTTGATTTATGGGCTAGAGAAGTTCTTGTAGTGAACAACAAACAACCAAEST: gi|76016745|gb|DT943915.1|DT943915
genomic: GACTGATCCTGGCGATACGGAAGGTGGTGCGGTTCAAGgtaacctgga ... atttttgcagAACTTGATTTATGGGCTAGAGAAGTTCTTGTAGTGAACAACAAACAACCAA
EST: GCCTGATGCCAGGACTGATCCTGGCGATACGGAAGGTGGTGCGGTTCAAG AACTTGATTTATGGGCTAGAGAAGTTCTTGTAGTGAACAACAAACAACCAAEST: gi|76285578|gb|DV025146.1|DV025146
genomic: GCCTGATGCCAGGACTGATCCTGGCGATACGGAAGGTGGTGCGGTTCAAGgtaacctgga ... atttttgcagAACTTGATTTATGGGCTAGAGAAGTTCTTGTAGTGAACAACAAACAACCAA
EST: GCCTGATGCCAGGACTGATCCTGGCGATACGGAAGGTGGTGCGGTTCAAG AACTTGATTTATGGGCTAGAGAAGTTCTTGTAGTGAACAACAAACAACCAA
genomic: GCCTGATGCCAGGACTGATCCTGGCGATACGGAAGGTGGTGCGGTTCAAGgtaacctgga ... atttttgcagAACTTGATTTATGGGCTAGAGAAGTTCTTGTAGTGAACAACAAACAACCAA
cttcactctctctggtctggtttgctgctaactaggattttgtttatttttgcagAACTTGATTTATGGGCTAGAGAAGTTCTTGTAGTGAACAACAAACAACCAATGCAAAACATCGACAGGCAACAGGCAAGGCAGATATCATCTGACGTCGC
tgctaac putative branch site (score: 43)
ttttgtttattttt putative PPT
attttgtttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacctggaactactcatgcatgggttctcttctgtgtcacagggtcgcttcgcttcactctctctggtctggtttgctgctaactaggattttgtttatttttgcagAACTTGATTTATGGGCTAGAGAAGTTCTTGTAGTGAACAACAAACAACCAATGCAAAACATCGACAGGCAACAGGCAAGGCAGATATCATCTGACGTCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT