Sequence
atgc intronic sequence ATGC exonic sequence...gatcttgacccaggtccattattttgtagtactgttatggattttatgttcatatagtaggcgtagaaaccaataatcaatttatgctataaatctgaagGTGGATGGTGATACTAGTACCAATGACTGTGTTATTGCTATGGCAAGTGGGTTGTCTGGTTTATCTGGAATTCAAAGTCTTGATAGCATTGAGGCTCAAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G044237_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os03g17120.1 (Oryza sativa), 3'ss of exon 10
gatcttgacccaggtccattattttg-tagtactgttatggattttatgttcatatagtaggcgtagaaaccaataatcaatttatgctataaatctgaagGTGGATGGTGATACTAGTACCAATGACTGTGTTATTGCTATGGCAAGTGGGTTGTCTGGTTTATCTGGAATTCAAAGTCTTGATAGCATTGAGGCTCAAC
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taatgcatcctctgtctactaatttggtatggttgttatggcaatt-tgatcctgaaactagtaggcaaacatcttgattgtttacgtcataattctttagGTGGATGGTGATACGAGTACCAATGACTGTGTTATTGCTCTGGCTAGTGGGTTATCTGGTTTATCCAGTATCCTTACTCATGATAGCACTGAAGCTCAAC
upper sequence: GRMZM2G044237_T01 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA13G19450.2 (Glycine max), 3'ss of exon 11
gatcttgacccaggtccattattttgtagtactgttatggattttatgttcatatagtaggcgtagaaaccaataatcaatttatgctataaat--ctgaagGTGGATGGTGATACTAGTACCAATGACTGTGTTATTGCTATGGCAAGTGGGTTGTCTGGTTTATCTGGAATTCAAAGTCTTGATAGCATTGAGGCTCAAC
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-caaaagattattagccaatttaatgtggtgccatc-cgaagcttttgcccccaatttttggattgtaattgattcctatgttttgcattattttgctacagGTAGATGGAGATACTAGTACTAATGATACTGTTATTGCCTTGGCTAGTGGGTTGTCTGGGCTTGGTTGCATATCTTCTCTAGACAGTGATGAGGCTATTC
upper sequence: GRMZM2G044237_T01 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA10G05090.1 (Glycine max), 3'ss of exon 10
gatcttgacccaggtccattatttt--gtagtactgtt-atggattttatgttcatatagtaggcgtagaaaccaataatcaatttatgc-tataaatctgaagGTGGATGGTGATACTAGTACCAATGACTGTGTTATTGCTATGGCAAGTGGGTTGTCTGGTTTATCTGGAATTCAAAGTCTTGATAGCATTGAGGCTCAAC
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--atttaatgtggttctcttgtgcaaggtggtgccatccaaagattttgcccccaatttttgg--attgtaattgattcctatgttttgcatattttgctacagGTAGATGGAGATACTAGTACTAATGATACTGTTATTGCTTTGGCTAGTGGGTTGTCTGGGCTAGGCTGCATATCTTCTCTAGACAGTGATGAGGCTATTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76917242|gb|DV166726.1|DV166726EST: GGAGAGAAATGATCCGGATGTCAGTGAGTAGAAGTTTCAACCAAATTACA GTGGATGGTGATACTAGTACCAATGACTGTGTTATTGCTATGGCAAGTGGG
genomic: GGAGAGAAATGATCCGGATGTCAGTGAGTAGAAGTTTCAACCAAATTACAgtgagtctct ... aaatctgaagGTGGATGGTGATACTAGTACCAATGACTGTGTTATTGCTATGGCAAGTGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgttcatatagtaggcgtagaaaccaataatcaatttatgctataaatctgaagGTGGATGGTGATACTAGTACCAATGACTGTGTTATTGCTATGGCAAGTGGGTTGTCTGGTTTATCTGGAATTCAAAGTCTTGATAGCATTGAGGCTCAAC
aataatcaatttatgc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatcttgacccaggtccattattttgtagtactgttatggattttatgttcatatagtaggcgtagaaaccaataatcaatttatgctataaatctgaagGTGGATGGTGATACTAGTACCAATGACTGTGTTATTGCTATGGCAAGTGGGTTGTCTGGTTTATCTGGAATTCAAAGTCTTGATAGCATTGAGGCTCAAC
- - - - - - - - - - - - - - - - - - - - - - - - ttcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgct