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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acttttagtcatatgttcatatatgtgaatatacttgtacggtatattaacctcgctttttgctgacttgagttcattgctgtttgaattattgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCAAGACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGG

Basic information

species Zea mays
transcript GRMZM2G043350_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043350_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os06g35530.1 (Oryza sativa), 3'ss of exon 10
--acttttagtcatatgttcatatatgtgaatatacttgtacggtatattaacctcgctttttgctgacttgagttcattgctgtttgaattattgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCAAGACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGG
     | | ||| | |   ||  || || |    |  | |     | ||      |   |  |||   | |   || ||| || ||||  ||||| ||  |||| ||||| |||||||||||||| ||||| || ||||||||| ||||||||| ||| || ||||| || || ||||| || || |||||||||||||| |
ctttgtcttgtcttgttcccaattaggtcatctgatatatgataaaaatatttggcatgtcctgcaagcctc--ttaattactctttgtgttattattacagCTGGAGGCATGTGCTCATTCATTTTTTGATGAGTTACGAGAACCACATGCAAAACTGCCAAATGGCCGTCCGTTTCCGCCTCTGTTCAACTTTAAGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149101574|gb|EE187700.2|EE187700
EST:     ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCA                         CTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
genomic: ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagttttt ... attgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
EST: gi|32848647|gb|CD988328.1|CD988328
EST:     ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCA                         CTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
genomic: ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagttttt ... attgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
EST: gi|71759011|gb|DR956948.1|DR956948
EST:     ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCA                         CTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
genomic: ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagttttt ... attgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
EST: gi|60346873|gb|DN213846.1|DN213846
EST:     ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGTGCA                         CTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
genomic: ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagttttt ... attgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
EST: gi|60353976|gb|DN220949.1|DN220949
EST:     ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCA                         CTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
genomic: ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagttttt ... attgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
EST: gi|71446525|gb|DR827575.1|DR827575
EST:     ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCA                         CTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
genomic: ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagttttt ... attgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
EST: gi|78092424|gb|DV520798.1|DV520798
EST:     ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCA                         CTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
genomic: ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagttttt ... attgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
EST: gi|60338451|gb|DN205424.1|DN205424
EST:     ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCA                         CTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
genomic: ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagttttt ... attgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
EST: gi|60401450|gb|DN234257.1|DN234257
EST:     ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGTGCA                         CTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
genomic: ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagttttt ... attgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
EST: gi|60399024|gb|DN231840.1|DN231840
EST:     ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCA                         CTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
genomic: ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagttttt ... attgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaacctcgctttttgctgacttgagttcattgctgtttgaattattgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCAAGACTCCCTAATGGACGCCCATTTCCTCCACTATTCAACTTTAAGCAGG
                                              ttgttct  CT-rich tract
                                     tttgaattattgtt  TA-rich tract