1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...caaacaataatgtttatgttattatcatgtgtacaatatgatctcccttattcttgatgttcctgatggtggagtccttatcacaatggttatgctgcagATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCA
species | Zea mays |
transcript | GRMZM2G043350_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGATAAAAGCATGTCCATGGCACAAG ATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTTEST: gi|32848647|gb|CD988328.1|CD988328
genomic: AGATAAAAGCATGTCCATGGCACAAGgtgtgtgcac ... tatgctgcagATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTT
EST: ACTATACAGAATTCAAGTTTCCTCAGATAAAAGCATGTCCATGGCACAAG ATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTTEST: gi|71759011|gb|DR956948.1|DR956948
genomic: ACTATACAGAATTCAAGTTTCCTCAGATAAAAGCATGTCCATGGCACAAGgtgtgtgcac ... tatgctgcagATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTT
EST: ACTATACAGAATTCAAGTTTCCTCAGATAAAAGCATGTCCATGGCACAAG ATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTTEST: gi|60346873|gb|DN213846.1|DN213846
genomic: ACTATACAGAATTCAAGTTTCCTCAGATAAAAGCATGTCCATGGCACAAGgtgtgtgcac ... tatgctgcagATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTT
EST: ACTATACAGAATTCAAGTTTCCTCAGATAAAAGCATGTCCATGGCACAAG ATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTTEST: gi|60353976|gb|DN220949.1|DN220949
genomic: ACTATACAGAATTCAAGTTTCCTCAGATAAAAGCATGTCCATGGCACAAGgtgtgtgcac ... tatgctgcagATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTT
EST: TATACAGAATTCAAGTTTCCTCAGATAAAAGCATGTCCATGGCACAAG ATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTTEST: gi|71446525|gb|DR827575.1|DR827575
genomic: TATACAGAATTCAAGTTTCCTCAGATAAAAGCATGTCCATGGCACAAGgtgtgtgcac ... tatgctgcagATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTT
EST: ACTATACAGAATTCAAGTTTCCTCAGATAAAAGCATGTCCATGGCACAAG ATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTTEST: gi|78092424|gb|DV520798.1|DV520798
genomic: ACTATACAGAATTCAAGTTTCCTCAGATAAAAGCATGTCCATGGCACAAGgtgtgtgcac ... tatgctgcagATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTT
EST: ACTATACAGAATTCAAGTTTCCTCAGATAAAAGCATGTCCATGGCACAAG ATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTTEST: gi|60338451|gb|DN205424.1|DN205424
genomic: ACTATACAGAATTCAAGTTTCCTCAGATAAAAGCATGTCCATGGCACAAGgtgtgtgcac ... tatgctgcagATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTT
EST: ACTATACAGAATTCAAGTTTCCTCAGATAAAAGCATGTCCATGGCACAAG ATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTTEST: gi|166610943|gb|EG292720.1|EG292720
genomic: ACTATACAGAATTCAAGTTTCCTCAGATAAAAGCATGTCCATGGCACAAGgtgtgtgcac ... tatgctgcagATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTT
EST: CTCAGATAAAAGCATGTCCATGGCACAAG ATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTTEST: gi|60401450|gb|DN234257.1|DN234257
genomic: CTCAGATAAAAGCATGTCCATGGCACAAGgtgtgtgcac ... tatgctgcagATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTT
EST: CTCAGATAAAAGCATGTCCATGGCACAAG ATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTTEST: gi|60399024|gb|DN231840.1|DN231840
genomic: CTCAGATAAAAGCATGTCCATGGCACAAGgtgtgtgcac ... tatgctgcagATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTT
EST: ACTATACAGAATTCAAGTTTCCTCAGATAAAAGCATGTCCATGGCACAAG ATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTT
genomic: ACTATACAGAATTCAAGTTTCCTCAGATAAAAGCATGTCCATGGCACAAGgtgtgtgcac ... tatgctgcagATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTT
ccttattcttgatgttcctgatggtggagtccttatcacaatggttatgctgcagATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCA
tcctgat putative branch site (score: 77)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaacaataatgtttatgttattatcatgtgtacaatatgatctcccttattcttgatgttcctgatggtggagtccttatcacaatggttatgctgcagATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCA
- aacaata
- - - - - - -ttatgtt
- - - - - - - - - - - - -catgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcacaa