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...tgtaactttattctattgcgattttcacaaaaagaaaacaagaaaccgaattctctagttggtgattctggttgcattctcatgttttgttatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
species | Zea mays |
transcript | GRMZM2G043198_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|149060160|gb|EE157128.2|EE157128
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|6056687|gb|AW091092.1|AW091092
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|32801932|gb|CD954168.1|CD954168
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCAGATAAACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|110221099|gb|EC902997.1|EC902997
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|71431245|gb|DR812295.1|DR812295
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|148928998|gb|EC874173.2|EC874173
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCCCTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|32788226|gb|CD940462.1|CD940462
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|76282095|gb|DV021663.1|DV021663
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|31349832|gb|CD434189.1|CD434189
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|67038743|gb|CO464998.1|CO464998
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|60396979|gb|DN229798.1|DN229798
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|463331|gb|T18298.1|T18298
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTNAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|71316610|gb|DR794980.1|DR794980
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: CCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|32801690|gb|CD953926.1|CD953926
genomic: CCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|31349833|gb|CD434190.1|CD434190
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCCCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|6031329|gb|AW076186.1|AW076186
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|78086374|gb|DV514767.1|DV514767
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|78092118|gb|DV520492.1|DV520492
genomic: AAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: CAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGCCCAAGGAAGGTATCAGTGCCGAGEST: gi|60340342|gb|DN207315.1|DN207315
genomic: CAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTTTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|32802072|gb|CD954308.1|CD954308
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|211383123|gb|FL435718.1|FL435718
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|40336329|gb|CK370399.1|CK370399
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: GGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|71432758|gb|DR813808.1|DR813808
genomic: GGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|44900498|gb|CK827043.1|CK827043
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|148951825|gb|EC897588.2|EC897588
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: GGATATGCCCTTCAG GCCGCTGATTATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|60340970|gb|DN207943.1|DN207943
genomic: GGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGA-TATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|6828052|gb|AW331695.1|AW331695
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCNCTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|5566870|gb|AI881781.1|AI881781
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAGEST: gi|37378649|gb|CF626026.1|CF626026
genomic: AAGATGTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
EST: GTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAG GCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
genomic: GTCACTATCACTGCATTCTCCAAAATGGTGGGATATGCCCTTCAGgtgtgttgag ... tatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
ccgaattctctagttggtgattctggttgcattctcatgttttgttatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
ttttgttatttttc CT-rich tract
atgttttgttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaactttattctattgcgattttcacaaaaagaaaacaagaaaccgaattctctagttggtgattctggttgcattctcatgttttgttatttttcagGCCGCTGATATACTGGCCAAGGAAGGTATCAGTGCCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA