Sequence
atgc intronic sequence ATGC exonic sequence...atgcatttttttatatttcatcatttgtttttgtaacttaatttcaactacgtctctttgtacttggtacaaaaaaaacacctgcttttgtatcttccagGTAGCTAAGGCTTTGATTGAACTCTTTGGTGAAATGATATTTGTACATGGTTTTGTTCACGGTGATCCACATCCTGGAAATATATTAGTTTCTCCTGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G040720_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os11g34750.1 (Oryza sativa), 3'ss of exon 11
atgcatttttttatatttcatcatttgtttttgtaacttaatttcaactacgtctctttgtacttggtacaaaaaaaacacctgcttttg--tatcttccagGTAGCTAAGGCTTTGATTGAACTCTTTGGTGAAATGATATTTGTACATGGTTTTGTTCACGGTGATCCACATCCTGGAAATATATTAGTTTCTCCTGAAG
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attc-taattttgcttgttat-acttgatattaaaattttattcactgactagctaattgatttttctctgtttttggtacctttctatgcttatcattcagGTAGCTAAAGCATTAATTGAACTGTTTGGCGAAATGATTTTTGTACATGGTTTTGTTCATGGCGATCCTCATCCTGGAAATATATTAGTTTCTCCTCAAG
upper sequence: GRMZM2G040720_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os11g34830.1 (Oryza sativa), 3'ss of exon 8
atgcatttttttatatttcatcatttgtttttgtaacttaatttcaactacgtctctttgtacttggtacaaaaaaaacacctgcttttg--tatcttccagGTAGCTAAGGCTTTGATTGAACTCTTTGGTGAAATGATATTTGTACATGGTTTTGTTCACGGTGATCCACATCCTGGAAATATATTAGTTTCTCCTGAAG
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attc-taattttgcttgttat-acttgatattaaaattttattcactgactagctaattgatttttctctgtttttggtacctttctatgcttatcttttagGTAGCTGAAACATTAATTGAATTGTTTGGCGAAATGATTTTTGTACATGGTTTTGTTCATGGCGATCCTCATCCTGGAAATATATTAGTTTCTCCTCAAG
upper sequence: GRMZM2G040720_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA02G40830.1 (Glycine max), 3'ss of exon 9
atgcatttttttatatttcatcatttgtttttgtaacttaatttcaactacgtctctttgtacttggtacaaaaaaaacacctgcttttgtatcttccagGTAGCTAAGGCTTTGATTGAACTCTTTGGTGAAATGATATTTGTACATGGTTTTGTTCACGGTGATCCACATCCTGGAAATATATTAGTTTCTCCTGAAG
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atcagatgaatatcaactctaatctcattcattttgttcaactgttgtagtgctaagtgctaacttgcttaactgattcattttaaaactgttactgaagGTAGCAAAATCATTGACTGAGCTGTTTGCTGAAATGATATTTGTACATGGCTACATACATGGTGATCCACACCCTGGTAATATATTAGTTTCTCCTGAAG
upper sequence: GRMZM2G040720_T01 (Zea mays), 3'ss of exon 8
lower sequence: AT1G65950.1 (Arabidopsis thaliana), 3'ss of exon 10
-----------------------------------------------------atgcattt---ttttatatttcatcatttgtttttgtaacttaatttcaactacgtctctttgtacttggtacaaaaaaaacacctgcttttgtatcttccagGTAGCTAAGGCTTTGATTGAACTCTTTGGTGAAATGATATTTGTACATGGTTTTGTTCACGGTGATCCACATCCTGGAAATATATTAGTTTCTCCTGAAG
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gttggtaaccactccttgtgcataagttatgaaatacacctttggtctgtaacgagcatttgacctgtgaaatttaggcttagccttcgaaac---gtcaaatatacgctttgatttctttgctgacgcatgaaagtttttcccaaattacaatagGTTGCTAAAGTATTGGTTGAAGTGTTTGCTGAAATGATATTTGTTCACGGGTTCATACATGGCGATCCGCATCCTGGAAATATACTAGTTTCTCCTGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31351515|gb|CD435872.1|CD435872EST: GTTAACGACTTGGACTTCCTGCGGAAAACAGATATTAGCCCTACAAAG GTAGCTAAGGCTTTGATTGAACTCTTTGGTGAAATGATATTTGTACAT
genomic: GTTAACGACTTGGACTTCCTGCGGAAAACAGATATTAGCCCTACAAAGgtttttagct ... tatcttccagGTAGCTAAGGCTTTGATTGAACTCTTTGGTGAAATGATATTTGTACAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aactacgtctctttgtacttggtacaaaaaaaacacctgcttttgtatcttccagGTAGCTAAGGCTTTGATTGAACTCTTTGGTGAAATGATATTTGTACATGGTTTTGTTCACGGTGATCCACATCCTGGAAATATATTAGTTTCTCCTGAAG
cttttgtatcttcc CT-rich tract
tacaaaaaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgcatttttttatatttcatcatttgtttttgtaacttaatttcaactacgtctctttgtacttggtacaaaaaaaacacctgcttttgtatcttccagGTAGCTAAGGCTTTGATTGAACTCTTTGGTGAAATGATATTTGTACATGGTTTTGTTCACGGTGATCCACATCCTGGAAATATATTAGTTTCTCCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG