Sequence
atgc intronic sequence ATGC exonic sequence...tttgaggtaactaatgggagcactcaccattgtgcagaatgagtttgcctcttctattttgtagaatctggacatctaaaatggtgtatggcttttgcagTTCTGTTGGATCATGGAATTTATAGAGAATTGGACCAAAAGTTCAGATTGGACTATTGTCGGCTATGGAAAGCACTGATATTGTTGGATTCAAACAAAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G040720_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os11g34750.1 (Oryza sativa), 3'ss of exon 12
-tttgaggtaactaatgggagcactcaccattgtgcagaatgagtttgcctcttctattttgtagaatctggacatc-taaaatggtgtatggcttttgcagTTCTGTTGGATCATGGAATTTATAGAGAATTGGACCAAAAGTTCAGATTGGACTATTGTCGGCTATGGAAAGCACTGATATTGTTGGATTCAAACAAAAT
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gaagagagtagacacttaatatattc-cagtcattagattctattttgtaaagtgagctttaaattatttttagttggttaagtgatccata-tttttgcagTGCTGCTTGATCATGGAATTTATAAAGAATTAGACCAAAAGTTCAGATTGGACTATTGTCAGCTGTGGAAAGCGTTGATATTGTTGGATTCTCAAAAAAT
upper sequence: GRMZM2G040720_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os11g34830.1 (Oryza sativa), 3'ss of exon 9
-tttgaggtaactaatgggagcactcaccattgtgcagaatgagtttgcctcttctattttgtagaatctggacatc-taaaatggtgtatggcttttgcagTTCTGTTGGATCATGGAATTTATAGAGAATTGGACCAAAAGTTCAGATTGGACTATTGTCGGCTATGGAAAGCACTGATATTGTTGGATTCAAACAAAAT
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gaagagagtagacacttaatatattc-cagtcattagattctattttataaagtgagctttaaataatttttagttggttaagtgatccata-tttttgcagTGCTGCTTGATCATGGAATTTATAAAGAATTAGACCAAAAGTTCAGATTGGACTATTGTCAGCTGTGGAAAGCGTTGATATTGTTGGATTCTCAAAAAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9824900|gb|BE574997.1|BE574997EST: TCCTGGAAATATATTAGTTTCTCCTGAAGGCCATGGGAAATTTTCACTAG TTCTGTTGGATCATGGAATTTATAGAGAATTGGACCAAAAGTTCAGATTGG
genomic: TCCTGGAAATATATTAGTTTCTCCTGAAGGCCATGGGAAATTTTCACTAGgtactcattt ... gcttttgcagTTCTGTTGGATCATGGAATTTATAGAGAATTGGACCAAAAGTTCAGATTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcctcttctattttgtagaatctggacatctaaaatggtgtatggcttttgcagTTCTGTTGGATCATGGAATTTATAGAGAATTGGACCAAAAGTTCAGATTGGACTATTGTCGGCTATGGAAAGCACTGATATTGTTGGATTCAAACAAAAT
atctaaa putative branch site (score: 3)
cttttgc putative PPT
ttctatttt TA-rich tract