1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aattttagtcattgaggaaccagaagtcaattactgaattacataaaatccttaaattcttctacctccgtgacgtttggcatggtatactccaatgcagATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTGAATTTTCAGCTATTTGAGACAGCAACTCTCTTCATAACAGTGCTTGTGG
species | Zea mays |
transcript | GRMZM2G040017_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TAACACTGGGTGTTGCAATTGGTTCATCAACMCAGATATCAATGTTTGTG ATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTGEST: gi|149085153|gb|EE174657.2|EE174657
genomic: TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tccaatgcagATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
EST: TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTG ATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTGEST: gi|211010290|gb|FL457993.1|FL457993
genomic: TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tccaatgcagATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
EST: TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTG ATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTGEST: gi|91868897|gb|EB400200.1|EB400200
genomic: TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tccaatgcagATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
EST: TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTG ATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTGEST: gi|32837305|gb|CD976983.1|CD976983
genomic: TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tccaatgcagATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
EST: TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTG ATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTGEST: gi|32836604|gb|CD976282.1|CD976282
genomic: TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tccaatgcagATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
EST: TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTG ATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTGEST: gi|148972711|gb|EE023671.2|EE023671
genomic: TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tccaatgcagATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
EST: TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTG ATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
genomic: TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tccaatgcagATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
aaatccttaaattcttctacctccgtgacgtttggcatggtatactccaatgcagATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTGAATTTTCAGCTATTTGAGACAGCAACTCTCTTCATAACAGTGCTTGTGG
ttaaattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttagtcattgaggaaccagaagtcaattactgaattacataaaatccttaaattcttctacctccgtgacgtttggcatggtatactccaatgcagATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTGAATTTTCAGCTATTTGAGACAGCAACTCTCTTCATAACAGTGCTTGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - gaaccag
- - - - - - - - - - - - - - - - actgaat
- - - - - - - - - - - - - - - - - - - - acataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatggt