1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgcgtccatttctttccttattcgttcactttagtggatagttagctaaatactgattattatgaagtttgcttatctattgttgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCTAGAAAGGTCAGACGAGAGGTTGCAGCCATGGAGAAAGAAGTTGCAGCAA
species | Zea mays |
transcript | GRMZM2G039325_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CATGCCATGAAAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCTEST: gi|16378770|gb|BI992594.1|BI992594
genomic: CATGCCATGAAAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAGgtatgcgtcc ... tgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCT
EST: CATGCCATGAAAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCTEST: gi|14202547|gb|BG836224.1|BG836224
genomic: CATGCCATGAAAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAGgtatgcgtcc ... tgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCT
EST: CATGCCATGAAAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCTEST: gi|6012204|gb|AW061746.1|AW061746
genomic: CATGCCATGAAAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAGgtatgcgtcc ... tgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCT
EST: CATGCCATGAAAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCTEST: gi|29945923|gb|CB815888.1|CB815888
genomic: CATGCCATGAAAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAGgtatgcgtcc ... tgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCT
EST: CATGCCATGAAAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCTEST: gi|71760015|gb|DR957952.1|DR957952
genomic: CATGCCATGAAAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAGgtatgcgtcc ... tgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCT
EST: CATGCCATGAAAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCTEST: gi|211530545|gb|FL066727.1|FL066727
genomic: CATGCCATGAAAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAGgtatgcgtcc ... tgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCT
EST: CATGCCATGAAAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCTEST: gi|14202541|gb|BG836218.1|BG836218
genomic: CATGCCATGAAAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAGgtatgcgtcc ... tgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCT
EST: CATGCCATGAAAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCTEST: gi|78024888|gb|DV493275.1|DV493275
genomic: CATGCCATGAAAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAGgtatgcgtcc ... tgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCT
EST: AAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCTEST: gi|78024574|gb|DV492961.1|DV492961
genomic: AAGATAAAGATGATGCTATTGAGgtatgcgtcc ... tgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCT
EST: CATGCCATGAAAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCTEST: gi|148967768|gb|EE019045.2|EE019045
genomic: CATGCCATGAAAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAGgtatgcgtcc ... tgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCT
EST: CATGCCATGAAAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCT
genomic: CATGCCATGAAAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAGgtatgcgtcc ... tgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCT
tagttagctaaatactgattattatgaagtttgcttatctattgttgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCTAGAAAGGTCAGACGAGAGGTTGCAGCCATGGAGAAAGAAGTTGCAGCAA
tactgat putative branch site (score: 283)
taaatactgattatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcgtccatttctttccttattcgttcactttagtggatagttagctaaatactgattattatgaagtttgcttatctattgttgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACCAAAGCAATGGAAGTGGAGGCTAGAAAGGTCAGACGAGAGGTTGCAGCCATGGAGAAAGAAGTTGCAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT