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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaagcttctcagccaactaatgtgaaagtgtcttgcatttaaaaaaatgaatttcacttttgcagGTTTTTTGACCGAGACATTGAATGCATCTACAAGTTCTTTAACAAAAG

Basic information

species Zea mays
transcript GRMZM2G038309_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038309_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g66520.1 (Oryza sativa), 3'ss of exon 8
--gtatgaagcttctcagccaactaatgtgaaagtgtctt-gcatttaaaaaa-atgaatttcacttttgcagGTTTTTTGACCGAGACATTGAATGCATCTACAAGTTCTTTAACAAAAG
   | |||    |   ||      |  |  | | |  ||| | ||| |  |   |||| ||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||||  || ||
gtatgtgacatattctagtagttaagagaaagactacctttgtattcattattcatgagttttacttttgcagGTTTTTTGATCGAGATATTGAATGCATCTACAAATTCTTTAGGAAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agccaactaatgtgaaagtgtcttgcatttaaaaaaatgaatttcacttttgcagGTTTTTTGACCGAGACATTGAATGCATCTACAAGTTCTTTAACAAAAG
    aactaat  putative branch site (score: 2)
                                         tttcactttt  putative PPT
                          atttaaaaaaatgaat  TA-rich tract