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...ttaggttcagaatttcagttttcatgcattcattcatgttccaggcagttttatatcctgaaaagaattaaaggcttattttccttcctcctttttgcagGGTACATGGCCTCAAGTCTGGAAAGATGCTGAAAGAATTTCGAGGTCATTCTTCATATGTAAATTATGCCATCTTCACTACTGACGGTAGCCGTGTCATT
species | Zea mays |
transcript | GRMZM2G037683_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCACGTGATGGAACCCAAATATTGAGTACATCCTTTGACACTACCGCGAG G-TACATGGCCTCAAGTCTGGAAAGATGCTGAAAGAATTTCGAGGTCATTCEST: gi|211475898|gb|FL358552.1|FL358552
genomic: TCACGTGATGGAACCCAAATATTGAGTACATCCTTTGACACTACCGCGAGgtttcatata ... ctttttgcagGGTACATGGCCTCAAGTCTGGAAAGATGCTGAAAGAATTTCGAGGTCATTC
EST: TCACGTGATGGAACCCAAATATTGAGTACATCCTTTGACACTACCGCGAG GGTACATGGCCTCAAGTCTGGAAAGATGCTGAAAGAATTTCGAGGTCATTCEST: gi|67019283|gb|CO448032.1|CO448032
genomic: TCACGTGATGGAACCCAAATATTGAGTACATCCTTTGACACTACCGCGAGgtttcatata ... ctttttgcagGGTACATGGCCTCAAGTCTGGAAAGATGCTGAAAGAATTTCGAGGTCATTC
EST: TCACGTGATGGAACCCAAATATTGAGTACATCCTTTGACACTACCGCGAG GGTACATGGCCTCAAGTCTGGAAAGATGCTGAAAGAATTTCGAGGTCATTCEST: gi|23357683|gb|BU645332.1|BU645332
genomic: TCACGTGATGGAACCCAAATATTGAGTACATCCTTTGACACTACCGCGAGgtttcatata ... ctttttgcagGGTACATGGCCTCAAGTCTGGAAAGATGCTGAAAGAATTTCGAGGTCATTC
EST: TCACGTGATGGAACCCAAATATTGAGTACATCCTTTGACACTACCGCGAG GGTACATGGCCTCAAGTCTGGAAAGATGCTGAAAGAEST: gi|22521028|gb|BU079839.1|BU079839
genomic: TCACGTGATGGAACCCAAATATTGAGTACATCCTTTGACACTACCGCGAGgtttcatata ... ctttttgcagGGTACATGGCCTCAAGTCTGGAAAGATGCTGAAAGA
EST: TCACGTGATGGAACCCAAATATTGAGTACATCCTTTGACACTACCGCGAG GGTACATGGCCTCAAGTCTGGAAAGATGCTGAAAGAATTTCGAGGTCATTCEST: gi|211160334|gb|FL327726.1|FL327726
genomic: TCACGTGATGGAACCCAAATATTGAGTACATCCTTTGACACTACCGCGAGgtttcatata ... ctttttgcagGGTACATGGCCTCAAGTCTGGAAAGATGCTGAAAGAATTTCGAGGTCATTC
EST: TCACGTGATGGAACCCAAATATTGAGTACATCCTTTGACACTACCGSGAG GGTACATGGCCTCAAGTCTGGAAAGATGCTGAAAGAATTTCGAGGKCATTCEST: gi|26457208|gb|CA828791.1|CA828791
genomic: TCACGTGATGGAACCCAAATATTGAGTACATCCTTTGACACTACCGCGAGgtttcatata ... ctttttgcagGGTACATGGCCTCAAGTCTGGAAAGATGCTGAAAGAATTTCGAGGTCATTC
EST: TCACGTGATGGAACCCAAATATTGAGTACATCCTTTGACACTACCGCGAG GGTACATGGCCTCAAGTCTGGAAAGATGCTGAAAGAATTTCGAGGTCATTCEST: gi|91873183|gb|EB403140.1|EB403140
genomic: TCACGTGATGGAACCCAAATATTGAGTACATCCTTTGACACTACCGCGAGgtttcatata ... ctttttgcagGGTACATGGCCTCAAGTCTGGAAAGATGCTGAAAGAATTTCGAGGTCATTC
EST: TCACGTGATGGAACCCAAATATTGAGTACATCCTTTGACACTACCGCGAG GGTACATGGCCTCAAGTCTGGAAAGATGCTGAAAGAATTTCGAGGTCATTCEST: gi|211277652|gb|FL322062.1|FL322062
genomic: TCACGTGATGGAACCCAAATATTGAGTACATCCTTTGACACTACCGCGAGgtttcatata ... ctttttgcagGGTACATGGCCTCAAGTCTGGAAAGATGCTGAAAGAATTTCGAGGTCATTC
EST: TCACGTGATGGAACCCAAATATTGAGTACATCCTTTGACACTACCGCGAG GGTACATGGCCTCAAGTCTGGAAAGATGCTGAAAGAATTTCGAGGTCATTC
genomic: TCACGTGATGGAACCCAAATATTGAGTACATCCTTTGACACTACCGCGAGgtttcatata ... ctttttgcagGGTACATGGCCTCAAGTCTGGAAAGATGCTGAAAGAATTTCGAGGTCATTC
cagttttatatcctgaaaagaattaaaggcttattttccttcctcctttttgcagGGTACATGGCCTCAAGTCTGGAAAGATGCTGAAAGAATTTCGAGGTCATTCTTCATATGTAAATTATGCCATCTTCACTACTGACGGTAGCCGTGTCATT
cttattttccttcctc CT-rich tract
tgaaaagaattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaggttcagaatttcagttttcatgcattcattcatgttccaggcagttttatatcctgaaaagaattaaaggcttattttccttcctcctttttgcagGGTACATGGCCTCAAGTCTGGAAAGATGCTGAAAGAATTTCGAGGTCATTCTTCATATGTAAATTATGCCATCTTCACTACTGACGGTAGCCGTGTCATT
- - - - - - - - - - - - tgcattc
- - - - - - - - - - - - - - - -attcatg
- - - - - - - - - - - - - - - - - - - - ccaggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa