Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttttttcttctgcatcctaataaaaccctatcggttgtgactgtggcattgttctctttgtgttaataaaaccctatcagttgtgactatcggaagcgagcataatgagtgtgtttgcttgcgtaatgtgcagGGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGG

Basic information

species Zea mays
transcript GRMZM2G036861_T03
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036861_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os03g14990.1 (Oryza sativa), 3'ss of exon 10
gtttttttt---tcttctgc-atcctaataaaaccctatcggttgtgactgtggcattgttctctttgtgttaataaaaccctatcagttgtgactatcggaa-gcgagcataatgagtgtgtttgcttgcgtaatgtgcagGGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGG
||||| |     ||  |||   |  ||     |   |||   ||||    |   |||    ||   |     | |||||   ||  |||    | |||   |  |    | || |   | |  | |  |  ||    |||||||||||||||| |||||||| ||| |  |||||||||| ||||| ||||| ||  |  |||| |||
gttttatcctagtcccctgttgttttacagttatattatttattgttttcgctacatctagctgcattctagattaaaaaaatactagtaaatagtataacaccgttgtcttagtatttataat-gtgtatgtc-catgcagGGAGGGATATCAAATGGTGAAATTATATACTTCAAAGTAGCTTTCAAGCCAACCGCGACTATTGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgtgactatcggaagcgagcataatgagtgtgtttgcttgcgtaatgtgcagGGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGG
                       ataatga  TA-rich tract