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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttttttcttctgcatcctaataaaaccctatcggttgtgactgtggcattgttctctttgtgttaataaaaccctatcagttgtgactatcggaagcgagcataatgagtgtgtttgcttgcgtaatgtgcagGGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGG

Basic information

species Zea mays
transcript GRMZM2G036861_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036861_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os03g14990.1 (Oryza sativa), 3'ss of exon 10
gtttttttt---tcttctgc-atcctaataaaaccctatcggttgtgactgtggcattgttctctttgtgttaataaaaccctatcagttgtgactatcggaa-gcgagcataatgagtgtgtttgcttgcgtaatgtgcagGGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGG
||||| |     ||  |||   |  ||     |   |||   ||||    |   |||    ||   |     | |||||   ||  |||    | |||   |  |    | || |   | |  | |  |  ||    |||||||||||||||| |||||||| ||| |  |||||||||| ||||| ||||| ||  |  |||| |||
gttttatcctagtcccctgttgttttacagttatattatttattgttttcgctacatctagctgcattctagattaaaaaaatactagtaaatagtataacaccgttgtcttagtatttataat-gtgtatgtc-catgcagGGAGGGATATCAAATGGTGAAATTATATACTTCAAAGTAGCTTTCAAGCCAACCGCGACTATTGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16925294|gb|BM078362.1|BM078362
EST:     ATAAGGCTGGAAGTGTCAGGACACGGACTAATCGCTCGGGTGGTGTGCAG                         GGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCG
genomic: ATAAGGCTGGAAGTGTCAGGACACGGACTAATCGCTCGGGTGGTGTGCAGgttttttttt ... taatgtgcagGGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCG
EST: gi|148951093|gb|EC896758.2|EC896758
EST:     ATAAGGCTGGAAGTGTCAGGACACGGACTAATCGCTCGGGTGGTGTGCAG                         GGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCG
genomic: ATAAGGCTGGAAGTGTCAGGACACGGACTAATCGCTCGGGTGGTGTGCAGgttttttttt ... taatgtgcagGGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCG
EST: gi|78109643|gb|DV528059.1|DV528059
EST:     ATAAGGCTGGAAGTGTCAGGACACGGACTAATCGCTCGGGTGGTGTGCAG                         GGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCG
genomic: ATAAGGCTGGAAGTGTCAGGACACGGACTAATCGCTCGGGTGGTGTGCAGgttttttttt ... taatgtgcagGGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCG
EST: gi|211012763|gb|FL448392.1|FL448392
EST:     ATAAGGCTGGAAGTGTCAGGACACGGACTAATCGCTCGGGTGGTGTGCAG                         GGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCG
genomic: ATAAGGCTGGAAGTGTCAGGACACGGACTAATCGCTCGGGTGGTGTGCAGgttttttttt ... taatgtgcagGGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCG
EST: gi|76281789|gb|DV021357.1|DV021357
EST:     ATAAGGCTGGAAGTGTCAGGACACGGACTAATCGCTCGGGTGGTGTGCAG                         GGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCG
genomic: ATAAGGCTGGAAGTGTCAGGACACGGACTAATCGCTCGGGTGGTGTGCAGgttttttttt ... taatgtgcagGGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCG
EST: gi|148940355|gb|EC885142.2|EC885142
EST:     ATAAGGCTGGAAGTGTCAGGACACGGACTAATCGCTCGGGTGGTGTGCAG                         GGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCG
genomic: ATAAGGCTGGAAGTGTCAGGACACGGACTAATCGCTCGGGTGGTGTGCAGgttttttttt ... taatgtgcagGGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCG
EST: gi|76934910|gb|DV174082.1|DV174082
EST:     ATAAGGCTGGAAGTGTCAGGACACGGACTAATCGCTCGGGTGGTGTGCAG                         GGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCG
genomic: ATAAGGCTGGAAGTGTCAGGACACGGACTAATCGCTCGGGTGGTGTGCAGgttttttttt ... taatgtgcagGGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCG
EST: gi|149098824|gb|EE184837.2|EE184837
EST:     ATAAGGCTGGAAGTGTCAGGACACGGACTAATCGCTCGGGTGGTGTGCAG                         GGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCG
genomic: ATAAGGCTGGAAGTGTCAGGACACGGACTAATCGCTCGGGTGGTGTGCAGgttttttttt ... taatgtgcagGGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgtgactatcggaagcgagcataatgagtgtgtttgcttgcgtaatgtgcagGGAGGGATATCGAATGGTGAGATTGTGCACTTCAAAGTTGCTTTTAAGCCGACACCATCTATCGGG
                       ataatga  TA-rich tract