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gtgcggttttggccttgtgtcgtttattttttgcacaagatgtagatgtttcaggggttcggaatcgcaaggtgctgatatatatagctttatttgctttgtgcgcagGGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGGCTGGAAGTGTCAGGACACGGACTAATCGCTCGGGTGGTGTGCAG
species | Zea mays |
transcript | GRMZM2G036861_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCG GGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGGEST: gi|148951093|gb|EC896758.2|EC896758
genomic: GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCGgtgcggtttt ... ttgtgcgcagGGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
EST: GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCG GGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGGEST: gi|78109643|gb|DV528059.1|DV528059
genomic: GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCGgtgcggtttt ... ttgtgcgcagGGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
EST: GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCG GGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGGEST: gi|76281789|gb|DV021357.1|DV021357
genomic: GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCGgtgcggtttt ... ttgtgcgcagGGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
EST: GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCG GGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGGEST: gi|148940355|gb|EC885142.2|EC885142
genomic: GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCGgtgcggtttt ... ttgtgcgcagGGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
EST: GAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCG GGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGGEST: gi|76934910|gb|DV174082.1|DV174082
genomic: GAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCGgtgcggtttt ... ttgtgcgcagGGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
EST: ATTGGCAGCGGATTCGCCG GGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGGEST: gi|149098824|gb|EE184837.2|EE184837
genomic: ATTGGCAGCGGATTCGCCGgtgcggtttt ... ttgtgcgcagGGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
EST: GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCG GGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
genomic: GCTTTCTATTCCTGCGAGCAACGGGTTCGAGATTGGCAGCGGATTCGCCGgtgcggtttt ... ttgtgcgcagGGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGG
ggggttcggaatcgcaaggtgctgatatatatagctttatttgctttgtgcgcagGGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGGCTGGAAGTGTCAGGACACGGACTAATCGCTCGGGTGGTGTGCAG
tgctgat putative branch site (score: 77)
tttgcttt putative PPT
atatatatagctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcggttttggccttgtgtcgtttattttttgcacaagatgtagatgtttcaggggttcggaatcgcaaggtgctgatatatatagctttatttgctttgtgcgcagGGACCGACTTGACAGGAAGTGAGCATAATGATGAGTTTTATATGGATAAGGCTGGAAGTGTCAGGACACGGACTAATCGCTCGGGTGGTGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG