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gtaatgtttattttctaatttaattgttatcgagttgttgtacctgccctcacatcaaaatctgagtattgtttgcctaagtaaaccttctcactctgtatatatctcgggcatatttcccaatgggtgtttttgttgatgagcagaggttttggctatctaaactcagaagtcctgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG
species | Zea mays |
transcript | GRMZM2G035150_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGEST: gi|78092883|gb|DV521257.1|DV521257
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: AGATACATGTTATATTGAGATTTTTCCTGTTGTTGAGAAATCCAGAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGEST: gi|4804174|gb|AI666040.1|AI666040
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGEST: gi|32808275|gb|CD960509.1|CD960509
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCGGAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGEST: gi|76289426|gb|DV028994.1|DV028994
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGEST: gi|71427953|gb|DR809003.1|DR809003
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGEST: gi|113633600|gb|DW792172.1|DW792172
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG TTATATGCTTGAGTTTTTGGGCEST: gi|32793686|gb|CD945922.1|CD945922
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGC
EST: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGEST: gi|86466720|gb|DY233090.1|DY233090
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGEST: gi|71427180|gb|DR808230.1|DR808230
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGEST: gi|50324081|gb|CO519207.1|CO519207
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGEST: gi|50331811|gb|CO526937.1|CO526937
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGEST: gi|78080763|gb|DV509175.1|DV509175
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGEST: gi|24462661|gb|BM660192.1|BM660192
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: CTGTTGTTGAGAAATCCAGAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGEST: gi|50327716|gb|CO522842.1|CO522842
genomic: CTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
ttttgttgatgagcagaggttttggctatctaaactcagaagtcctgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG
atctaaa putative branch site (score: 44)
tcctgtt putative PPT
tatctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtttattttctaatttaattgttatcgagttgttgtacctgccctcacatcaaaatctgagtattgtttgcctaagtaaaccttctcactctgtatatatctcgggcatatttcccaatgggtgtttttgttgatgagcagaggttttggctatctaaactcagaagtcctgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG