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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagggtgtcatgcttataaaaccttgtcagttcttgaattttgctgtgtttgataacaagatttgagttaagcacgcaattggaattctaagcagGAACCTGAGCCACAAATTTGTGCAAGCATACTGGAATCATTGAATGAATCTATACAG

Basic information

species Zea mays
transcript GRMZM2G033619_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G033619_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os03g49420.2 (Oryza sativa), 3'ss of exon 9
gtaagggtgtcatgcttataaaa---ccttgtcagttcttgaattttgctgtgtttgataacaagatttgagttaagcacgcaa--------ttggaattctaagcagGAACCTGAGCCACAAATTTGTGCAAGCATACTGGAATCATTGAATGAATCTATACAG
|||||  |  |||||| |   ||   ||||     | |||     ||| | ||||    |      ||    ||||||| |  |        ||| || | || ||||||||||||  ||||||| ||||||||||| ||||||||  |||||||||| ||||||
gtaagcatagcatgctaactgaaactccttacttttccttagtacttgttttgttgatcactgttgttctgtttaagcatgttattgaaagtttgaaactttatgcagGAACCTGACACACAAATATGTGCAAGCATGCTGGAATCGCTGAATGAATCAATACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93284006|gb|EB676270.1|EB676270
EST:     TGATTACATAGTTCCAGCCCTTGTTGAGGCCATGCATAAA                         GAACCTGAGCCACAAATTTGTGCAAGCATACTGGAATCATTGAATGAATCT
genomic: TGATTACATAGTTCCAGCCCTTGTTGAGGCCATGCATAAAgtaagggtgt ... ttctaagcagGAACCTGAGCCACAAATTTGTGCAAGCATACTGGAATCATTGAATGAATCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctgtgtttgataacaagatttgagttaagcacgcaattggaattctaagcagGAACCTGAGCCACAAATTTGTGCAAGCATACTGGAATCATTGAATGAATCTATACAG
          tgataac  putative branch site (score: 2)
        tttgataa  TA-rich tract