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gtgcttacatatttatatgctcttattatctgatgcttgtgttgtagacaattggtattttatacgtgtttgtgttgtgatattctatatttatgtgatcttgtagGTTTAAGGACATTTTCCAGGAGGTCTATGAAGCTGACTGGAAATCCAAATTTGAGGCTGCTGGAATATG
species | Zea mays |
transcript | GRMZM2G033515_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CGCTCTACCTTAGCACCAAAAACACAATCCTTGA-GAAATATGATGGCAG GTTTAAGGACATTTTCCCAGGAG-TCTATGAAGCTGACTGGAAATCCAAATEST: gi|84980627|gb|DW530976.1|DW530976
genomic: CGCTCTACCTTAGCACCAAAAACACAATCCT-GAAGAAATATGATGGCAGgtgcttacat ... gatcttgtagGTTTAAGGACATTTTCC-AGGAGGTCTATGAAGCTGACTGGAAATCCAAAT
EST: CCGCTCTACCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGCAG GTTTAAGGACATTTTCCAGGAGGTCTATGAAGCTGACTGGAAATCCAAATTEST: gi|78092177|gb|DV520551.1|DV520551
genomic: CCGCTCTACCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGCAGgtgcttacat ... gatcttgtagGTTTAAGGACATTTTCCAGGAGGTCTATGAAGCTGACTGGAAATCCAAATT
EST: CCGCTCTACCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGCAG GTTTAAGGACATTTTCCAGGAGGTCTATGAAGCTGACTGGAAEST: gi|32850747|gb|CD990428.1|CD990428
genomic: CCGCTCTACCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGCAGgtgcttacat ... gatcttgtagGTTTAAGGACATTTTCCAGGAGGTCTATGAAGCTGACTGGAA
EST: CCGCTCTACCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGCAG GTTTAAGGACATTTTCCAGGAGGTCTATGAAGCTGACTGGAAATCCAAATTEST: gi|32850346|gb|CD990027.1|CD990027
genomic: CCGCTCTACCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGCAGgtgcttacat ... gatcttgtagGTTTAAGGACATTTTCCAGGAGGTCTATGAAGCTGACTGGAAATCCAAATT
EST: CCGCTCTACCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGCAG GTTTAAGGACATTTTCCAGGAGGTCTATGAAGCTGACTGGAAATCCAAATT
genomic: CCGCTCTACCTTAGCACCAAAAACACAATCCTGAAGAAATATGATGGCAGgtgcttacat ... gatcttgtagGTTTAAGGACATTTTCCAGGAGGTCTATGAAGCTGACTGGAAATCCAAATT
ttggtattttatacgtgtttgtgttgtgatattctatatttatgtgatcttgtagGTTTAAGGACATTTTCCAGGAGGTCTATGAAGCTGACTGGAAATCCAAATTTGAGGCTGCTGGAATATG
tgatattctatattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttacatatttatatgctcttattatctgatgcttgtgttgtagacaattggtattttatacgtgtttgtgttgtgatattctatatttatgtgatcttgtagGTTTAAGGACATTTTCCAGGAGGTCTATGAAGCTGACTGGAAATCCAAATTTGAGGCTGCTGGAATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA