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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagattaaggatgggtatattagaagactgactgatttcctatgaattaataaatagaatgaacctagttttctctaaatattgtgcaatcatatttcagAAATTTAAGCAGCACCCTGCTGTTAGAAAACTTTTGGAAGGTGGAACAGCTATTCAGTATGGTGCACGTACTCTCAATGAAGGTGGTTTCCAG

Basic information

species Zea mays
transcript GRMZM2G032222_T03
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032222_T03 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os10g37210.1 (Oryza sativa), 3'ss of exon 9
-------aagattaaggatgggtatattagaagactgactgatttcctatgaattaataaat-----agaatgaacctagttttctctaaatattgtgcaatcatattt-------cagAAATTTAAGCAGCACCCTGCTGTTAGAAAACTTTTGGAAGGTGGAACAGCTATTCAGTATGGTGCACGTACTCTCAATGAAGGTGGTTTCCAG
       ||  ||      |  | |  |   |   ||   |  | |   |  | |  | ||      |   |  |  |  |||  |||||  ||| |||||||||||||       |||||||| ||||| ||||||||||| || | | ||||||| |||||||||| | ||||||||||||| |||||  | |||||||||||||| || 
gttagtcaaatttctatgggtatgttcttttatgatggtagtgtactagtatagtcctgaactcctgatggtcgattttttttcttctaagcattatgcaatcatattttatatttcagAAATTCAAGCAACACCCTGCTGTCAGGACAATTTTGGATGGTGGAACAGTTCTTCAGTATGGTGCTCGTACGTTGAATGAAGGTGGTTTTCAA

upper sequence: GRMZM2G032222_T03 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA15G03360.1 (Glycine max), 3'ss of exon 9
aagattaaggatgggtatattagaagactgactgatttcctatgaattaataaatagaatgaacctagttttctctaaatattgtg-caatcatattt--cagAAATTTAAGCAGCACCCTGCTGTTAGAAAACTTTTGGAAGGTGGAACAGCTATTCAGTATGGTGCACGTACTCTCAATGAAGGTGGTTTCCAG
 || |||    |   |||  |  |    |||    |  | | | | | ||| |      |    |     ||||||     ||||| |  || |  |   |||||| | ||||| || |||||  ||| |  | || ||||||||||||||| ||| |||||||| || || ||| | |||||||||||||| |||
-aggttacat-tacatattctgaattcgtgatccctaacat-ttattcaattatcttctttgctccttccttctctctcccttgtgtctgtcttggtcaccagAAACTAAAGCATCATCCTGCAATTAAATCATTTCTGGAAGGTGGAACAGTTATCCAGTATGGAGCTCGCACTTTAAATGAAGGTGGTTTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaataaatagaatgaacctagttttctctaaatattgtgcaatcatatttcagAAATTTAAGCAGCACCCTGCTGTTAGAAAACTTTTGGAAGGTGGAACAGCTATTCAGTATGGTGCACGTACTCTCAATGAAGGTGGTTTCCAG
                           ctctaaa  putative branch site (score: 3)
                       ttttctctaaatatt  TA-rich tract