1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...caaattgtgctgtagacttgtagcagcagtagcagtagtatacacccaaatgccataatttatcaaacatcctctgatgtcagtaacttccatgatccagAAGGAAAATCGGTTCAGCAGATGGTTGATGAAGCTCTCCAACGGGTACCTAACAACAATG
species | Zea mays |
transcript | GRMZM2G030138_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGCTTTTGAGCCAGCCAAACTTCTGTGGTTGATCCAGAGGGATTTTCTCC AAGGAAAATCGGTTCAGCAGATGGTTGATGAAGCTCTCCAACGGGTACCTAEST: gi|76019540|gb|DT946710.1|DT946710
genomic: TGCTTTTGAGCCAGCCAAACTTCTGTGGTTGATCCAGAGGGATTTTCTCCgtaagttgct ... catgatccagAAGGAAAATCGGTTCAGCAGATGGTTGATGAAGCTCTCCAACGGGTACCTA
EST: TGCTTTTGAGCCAGCCAAACTTCTGTGGTTGATCCAGAGGGATTTTCTCC AAGGAAAATCGGTTCAGCAGATGGTTGATGAAGCTCTCCAACGGGTACCTA
genomic: TGCTTTTGAGCCAGCCAAACTTCTGTGGTTGATCCAGAGGGATTTTCTCCgtaagttgct ... catgatccagAAGGAAAATCGGTTCAGCAGATGGTTGATGAAGCTCTCCAACGGGTACCTA
ccaaatgccataatttatcaaacatcctctgatgtcagtaacttccatgatccagAAGGAAAATCGGTTCAGCAGATGGTTGATGAAGCTCTCCAACGGGTACCTAACAACAATG
cagtaac putative branch site (score: 7)
cttccat CT-rich tract
ataatttatcaaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaattgtgctgtagacttgtagcagcagtagcagtagtatacacccaaatgccataatttatcaaacatcctctgatgtcagtaacttccatgatccagAAGGAAAATCGGTTCAGCAGATGGTTGATGAAGCTCTCCAACGGGTACCTAACAACAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - gctgtag
- - - - - - - - - - - gcagcag
- - - - - - - - - - - - -gcagtag
- - - - - - - - - - - - - - - - - - - - - - - caaatgc