Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattgcttatggatcacattttgatttctcataagggaaagagatacatgctgtgatgtatggtttactaagcttatagatagaggtagtaagttcctgcagttcctagtttaagcaatcaaggactctttttgcagGTTGCTAAAGATCTGGTTTTTGAGAAAGCATATTGCCCATTGGGTGTTCTTCTCATTATTTTTGAGTCTCGTCCTGATGCATTGGTCCAG

Basic information

species Zea mays
transcript GRMZM2G028535_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028535_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g62900.1 (Oryza sativa), 3'ss of exon 9
gtgattgcttatggatcacattttgatttctcataagggaaagagatacatgctgtgatgtat-ggtttactaagcttatagatagaggtagtaagttcctgcagttcctagtttaagcaatcaaggactctttttgcagGTTGCTAAAGATCTGGTTTTTGAGAAAGCATATTGCCCATTGGGTGTTCTTCTCATTATTTTTGAGTCTCGTCCTGATGCATTGGTCCAG
|||| ||| |||  | |  ||| | |  ||  |  | |  | | ||||  | ||   ||  ||   | |  ||||       ||  |  |  ||  ||| ||   ||     | ||| |||| |||||||  ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| || |||||||||||||| ||||||||||| ||||| |||
gtgaatgcatat--accctattctaaaatccaaacacg--atgtgataagtactacaatcaatcaatgtgataagtactacaatcaa--tcatagcttcatgtgatt-----tgtaaccaatgaaggacttgttttgtagGTTGCTAAAGATCTTGTTTTTGAGAAAACATATTGCCCATTGGGTGTTCTCCTAATTATTTTTGAGTCCCGTCCTGATGCCTTGGTACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24934245|gb|CA452463.1|CA452463
EST:     AAACTGCTGACATGGAGGACCCTATTTCCCATACATTGAAAAGAACAGAG                         GTTGCTAAAGATCTGGTTTTTGAGAAAGCATATTGCCCATTGGGTGTTCTT
genomic: AAACTGCTGACATGGAGGACCCTATTTCCCATACATTGAAAAGAACAGAGgtgattgctt ... ctttttgcagGTTGCTAAAGATCTGGTTTTTGAGAAAGCATATTGCCCATTGGGTGTTCTT
EST: gi|211307860|gb|FL092738.1|FL092738
EST:     CATTGAAAAGAACAGAG                         GTTGCTAAAGATCTGGTTTTTGAGAAAGCATATTGCCCATTGGGTGTTCTT
genomic: CATTGAAAAGAACAGAGgtgattgctt ... ctttttgcagGTTGCTAAAGATCTGGTTTTTGAGAAAGCATATTGCCCATTGGGTGTTCTT
EST: gi|6538931|gb|AW225070.1|AW225070
EST:     AACTGCTGACATGGAGGACCCTATTTCCCATACACTTGAAAAGAACAGAG                         GTTGCTAAAGATCTGGTTTTTGAGACAGCATATTGCCCATTGCGTGTTCTT
genomic: AACTGCTGACATGGAGGACCCTATTTCCCATACA-TTGAAAAGAACAGAGgtgattgctt ... ctttttgcagGTTGCTAAAGATCTGGTTTTTGAGAAAGCATATTGCCCATTGGGTGTTCTT
EST: gi|211307862|gb|FL092740.1|FL092740
EST:     CATTGAAAAGAACAGAG                         GTTGCTAAAGATCTGGTTTTTGAGAAAGCATATTGCCCATTGGGTGTTCTT
genomic: CATTGAAAAGAACAGAGgtgattgctt ... ctttttgcagGTTGCTAAAGATCTGGTTTTTGAGAAAGCATATTGCCCATTGGGTGTTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaggtagtaagttcctgcagttcctagtttaagcaatcaaggactctttttgcagGTTGCTAAAGATCTGGTTTTTGAGAAAGCATATTGCCCATTGGGTGTTCTTCTCATTATTTTTGAGTCTCGTCCTGATGCATTGGTCCAG
                                           ctctttttgc  CT-rich tract
                        tagtttaa  TA-rich tract