Sequence
atgc intronic sequence ATGC exonic sequencegtaattatggcatctttgaatcatttgtttgtatgtcttctatagcctatgtggtacaatgtgttttatttacttctgtttgtctgtatcacagGTCCGAGTCTCTGCTGTACTATCAAATGCTCCTTATTTGTTAAACTTGGATTGTGATCACTACATCAACAACAGCAAAGCTATAAAGGAAGCAATGTGTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G028353_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os07g24190.1 (Oryza sativa), 3'ss of exon 9
----------gtaattatggcatctttgaatcatttgtttgtatgtcttctatagcctatgtggtacaatgtgttttatttacttctgtttgtctgtatcacagGTCCGAGTCTCTGCTGTACTATCAAATGCTCCTTATTTGTTAAACTTGGATTGTGATCACTACATCAACAACAGCAAAGCTATAAAGGAAGCAATGTGTT
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gtaaaagataatttctttgatgtttttttggctttccataacctgtactcctgtattaacaaaatatagtgtatgtttaatttttttgctttgttgattcacagGTCCGAGTATCTGCTGTACTAACTAATGCTCCATACATGCTCAACTTGGATTGTGATCATTACATCAACAATAGCAAGGCTATAAAGGAAGCAATGTGTT
upper sequence: GRMZM2G028353_T02 (Zea mays), 3'ss of exon 9
lower sequence: Vv18s0122g00120.t01 (Vitis vinifera), 3'ss of exon 9
-------gtaattatggcatctttgaat--catttgtttgtatgtcttctatagcctatgtggtacaatgtgttttatttacttctgtttgtctgtatcacagGTCCGAGTCTCTGCTGTACTATCAAATGCTCCTTATTTGTTAAACTTGGATTGTGATCACTACATCAACAACAGCAAAGCTATAAAGGAAGCAATGTGTT
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gtaaatattagtaaagcgacaactgaattccgtatgttcttatgcagtctacaaaaatcttataatttttacctttatcttcattggcttgcccatcaaatagGTCCGAGTCTCTGCTGTGCTCACAAATGCACCATATCTGTTGAACTTGGATTGTGATCACTACATCAATAACAGTAAGGCTCTTAGGGAGTCTATGTGTT
upper sequence: GRMZM2G028353_T02 (Zea mays), 3'ss of exon 9
lower sequence: Vv03s0038g04250.t01 (Vitis vinifera), 3'ss of exon 9
gtaattatggcatctttgaatcatttgt-ttgtatgtcttctatagcctatgtggtacaatgtgttttatttacttctg---tttgtctgtatcacagGTCCGAGTCTCTGCTGTACTATCAAATGCTCCTTATTTGTTAAACTTGGATTGTGATCACTACATCAACAACAGCAAAGCTATAAAGGAAGCAATGTGTT
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gta--tgtagcttggtaaaatcacatctattctaggtgtcctgataaagatgtc------tgaattttatttcctggtgggcttattctttaaaacagGTCCGAGTCTCTGCTGTTCTTACGAATGCACCTTATCTATTGAATTTGGATTGTGATCACTACTTCAACAACAGCAAGGCTCTCAAGGAGGCAATGTGTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211016380|gb|FL362480.1|FL362480EST: AACGACCAGGCTATAACCATCATAAGAAAGCTGGTGCTATGAATGCATTG GTCCGAGTCTCTGCTGTACTATCAAATGCTCCTTATTTGTTAAACTTGGAT
genomic: AACGACCAGGCTATAACCATCATAAGAAAGCTGGTGCTATGAATGCATTGgtaattatgg ... tgtatcacagGTCCGAGTCTCTGCTGTACTATCAAATGCTCCTTATTTGTTAAACTTGGAT
EST:
gi|160481592|gb|EY254424.1|EY254424EST: AACGACCAGGCTATAACCATCATAAGAAAGCTGGTGCTATGAATGCATTG GTCCGAGTCTCTGCTGTACTATCAAATGCTCCTTATTTGTTAAACTTGGAT
genomic: AACGACCAGGCTATAACCATCATAAGAAAGCTGGTGCTATGAATGCATTGgtaattatgg ... tgtatcacagGTCCGAGTCTCTGCTGTACTATCAAATGCTCCTTATTTGTTAAACTTGGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctatagcctatgtggtacaatgtgttttatttacttctgtttgtctgtatcacagGTCCGAGTCTCTGCTGTACTATCAAATGCTCCTTATTTGTTAAACTTGGATTGTGATCACTACATCAACAACAGCAAAGCTATAAAGGAAGCAATGTGTT
tttgtct CT-rich tract
aatgtgttttattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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gtaattatggcatctttgaatcatttgtttgtatgtcttctatagcctatgtggtacaatgtgttttatttacttctgtttgtctgtatcacagGTCCGAGTCTCTGCTGTACTATCAAATGCTCCTTATTTGTTAAACTTGGATTGTGATCACTACATCAACAACAGCAAAGCTATAAAGGAAGCAATGTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA