1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgatcaaagtgaacaagataaatctgttttgttaagtgagattttcttgaagctaagatggatgtgcttgcacaacttatcatttgacttccccttgcagATTTCAAATAGCTGGAGCTACCCTCCCCTAAATGACGCCATTGAAGTAGCTACTCGTGTTCGTGAAGTGATTGCAGAACGAGGGTGGACAGTGGGATGAT
species | Zea mays |
transcript | GRMZM2G026900_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGACTCTACGGGAGCGAGGGGTTGTTCGCCCGTTCACTGGATTGGAAGAT ATTTCAAATAGCTGGAGCTACCCTCCCCTAAATEST: gi|211458184|gb|FL467236.1|FL467236
genomic: AGACTCTACGGGAGCGAGGGGTTGTTCGCCCGTTCACTGGATTGGAAGATgtaagttttt ... ccccttgcagATTTCAAATAGCTGGAGCTACCCTCCCCTAAAT
EST: AGACTCTACGGGAGCGAGGGGTTGTTCGCCCGTTCACTGGATTGGAAGAT ATTTCAAATAGCTGGAGCTACCCTCCCCTAAATGACGCCATTGAAGTAGCT
genomic: AGACTCTACGGGAGCGAGGGGTTGTTCGCCCGTTCACTGGATTGGAAGATgtaagttttt ... ccccttgcagATTTCAAATAGCTGGAGCTACCCTCCCCTAAATGACGCCATTGAAGTAGCT
cttgaagctaagatggatgtgcttgcacaacttatcatttgacttccccttgcagATTTCAAATAGCTGGAGCTACCCTCCCCTAAATGACGCCATTGAAGTAGCTACTCGTGTTCGTGAAGTGATTGCAGAACGAGGGTGGACAGTGGGATGAT
atttgac putative branch site (score: 4)
tttgacttcccctt CT-rich tract
ttatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatcaaagtgaacaagataaatctgttttgttaagtgagattttcttgaagctaagatggatgtgcttgcacaacttatcatttgacttccccttgcagATTTCAAATAGCTGGAGCTACCCTCCCCTAAATGACGCCATTGAAGTAGCTACTCGTGTTCGTGAAGTGATTGCAGAACGAGGGTGGACAGTGGGATGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA